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Taking Stock of the Known and Unknown Microbial Space
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … assesses what fraction of the microbial diversity we know about, and proposes a path forward to curate and cultivate … bacterial diversity. The team conservatively estimated that about 42% of the bacterial diversity has no genomic …
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Fishing for Novel Cellulose Degraders
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … and unknown. The challenge remains to learn more about what microbes are present in any given … spectrometry-based enzyme activity assay. The work was  reported in  The ISME Journal . While the screen caught …
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Biotech Partners Summer Intern Co-Authors NAR Paper
… Kaushal Sharma, one of five Antioch High School rising juniors … Database (GOLD) administered by the DOE JGI. T.B.K Reddy, Kaushal‘s mentor, described his student’s contributions as … tasks we assigned.”       Click here to watch a video about the Biotech Partner summer interns at the JGI. What …
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Secrets of the Needles: What Microbes do on Conifer Leaves
… The Science In a recent Microbiome paper , scientists focused on the conifer needle microbiome. The phyllosphere, … pine, Douglas fir and Engelmann spruce–to learn more about conifer needle microbiomes. The survey showed what … genetic elements across all of the metagenomes. Learn more about her time at the JGI here . Bennett is applying the …
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Characterizing Communities: JGI Announces Latest CSP Portfolio
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science user facility, 24 large-scale proposals have been accepted … the University of Minnesota is interested in learning more about the fungal endophytes of soybean and how they deter … this approach would also allow researchers to learn more about what is and is not modifiable in crops, which can help …
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Gene Expression: From On-Off Switch to Dial
… approach to expression, scientists can now opt for various shades of grey. The ability to fine-tune the level of … of essential genes in metabolic networks that were missed using traditional approaches. This novel form of … the realm of bioenergy optimization. Summary Life is all about balance. This study,  recently published in the  …
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Next generation sequencing and bioinformatic bottlenecks: the current state of metagenomic data analysis
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Testing for the Genomic Footprint of Conflict Between Life Stages in an Angiosperm and Moss Species
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The Surprising Structure of a Shrub Willow Sex Chromosome
… in mammals: a structure that helps correct deleterious mutations. The Impact Shrub willow and its close relative  Populus trichocarpa,  or the poplar tree, are potential biofuel … willow is flipped: females are heterogametic. To avoid confusion with the mammalian system, the sex chromosomes are …
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Nikos Kyrpides
… at Argonne National Laboratory. Dr. Kyrpides’ research focus on Microbiome Research with an emphasis on Microbiome … bacteriophages. Cell . 185(21):4023-4037 Nayfach S, et al. (2021) Metagenomic compendium of 189,680 DNA viruses from the human gut microbiome. Nat Microbiol . …
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Understanding Wildfire Recovery, Starting in Soil
… forest floor. Within the soil, a microbiome of bacteria, viruses and fungi process carbon and nitrogen, paving the way … from a wildfire that burned at the Colorado-Wyoming border, about a year after the fire. They sampled soil across a … look like a year after a fire. It also opens questions about what the soil microbiome looks like over longer times …
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Finding the Fermenters
… of fermentative prokaryotes. The Science Most organisms use oxygen to convert food into energy. However, in … or no oxygen, life had found other ways to produce energy, using a process called fermentation. To better understand … used the JGI’s GOLD and IMG data portals to get information about the genomes and genes of the organisms on the list. …
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