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Detection of short-term cropping system-induced changes to soil bacterial communities differs among four molecular characterization methods
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The Genomes OnLine Database (GOLD) v.5: a metadata management system based on a four level (meta)genome project classification
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Microbial community analysis of three hydrocarbon reservoir cores provides valuable insights for the assessment of reservoir souring potential
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Microbial Metagenomes Across a Complete Phytoplankton Bloom Cycle: High-Resolution Sampling Every 4 Hours Over 22 Days
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Bacteria and Fungi Divvy Up the Work in Forest Floor
… and what escapes to the atmosphere in the form of greenhouse gases (e.g., carbon dioxide, methane, and nitrous oxide). Summary To do this work, the international … than expected. The transcriptome data had suggested about a 50/50 split between fungal and bacterial enzymes. …
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CalTeach
… of STEM teaching & learning. Their coursework focuses on STEM pedagogy, educational theory and promoting diversity, equity, and inclusion, with concurrent field work in local classrooms and … or math teaching credential as an undergraduate simultaneously with their undergraduate degree. Our interns say their …
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The More the Merrier: Making the Case for Plant Pan-genomes
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … and in the laboratory. “We are fortunate because the progenitor species of  Brachypodium hybridum are … de Zaragoza, one of the paper’s senior authors. “It offers us the possibility to explore genomically the whole complex …
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Partners
… expand data functionality. Close partnerships with other user facilities enable the ability to leverage their … through the Facilities Integrating Collaborations for User Science (FICUS) program.     …
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Accelerating Metagenomics Discoveries with Deep Learning
… workshop, Volkan Sevim, a computational biologist at the US Department of Energy (DOE) Joint Genome Institute (JGI), … that low sequence identity may belie. The technology he’s using is magical; transform any length of amino acid sequence into a smaller, constant-length vector using deep learning. Vector representations allow homology …
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Building Sphagnum Genomic Resources
… resources to build up Sphagnum as a plant model system focused on carbon cycling studies, rather than for food or fuel … is estimated to be larger than any other single plant genus. Peatlands accumulate partially decomposed matter, and researchers estimate that they hold about 25 percent of the world’s soil carbon. In high …
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Four Draft Single-Cell Genome Sequences of Novel, Nearly Identical Kiritimatiellaeota Strains Isolated from the Continental Deep Subsurface
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10 From JGI on the 2019 Highly Cited Researchers List
… includes 10 affiliated with the JGI . The 2019 list focused on Highly Cited Papers, defined in the Methodology … gradient across the United States. Go here to learn more about the project . Igor Grigoriev and Asaf Salamov were … genomes of more than 300 Aspergillus Go here to learn more about the project. Natalia Ivanova, Nikos Kyrpides, Susannah …
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