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Bacteria and Fungi Divvy Up the Work in Forest Floor
… and what escapes to the atmosphere in the form of greenhouse gases (e.g., carbon dioxide, methane, and nitrous … reference fungal genome sequences assembled as part of its 1000 Fungal Genomes Project . To map microbial activity, … than expected. The transcriptome data had suggested about a 50/50 split between fungal and bacterial enzymes. …
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Frederik Schulz
Frederik Schulz joined the DOE Joint Genome Institute in 2016 and is leading the New Lineages of Life Group. His research is focussed on the discovery of novel bacterial, archaeal and … 9 (1), 1-9 Roux et al. (2018) Minimum Information about an Uncultivated Virus Genome (MIUViG). Nature …
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Fungus Fuels Tree Growth
… a potential biofuel feedstock.     The Science The fungus  Mortierella elongata enjoys a dual lifestyle; it can … and without an inoculation of the  M. elongata strain PM193 added to a diluted soil mixture, publishing  the results … were striking. Adding PM193 caused poplar cuttings to grow about 30 percent larger by dry weight than without PM193  . …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… a computational pipeline to sift and characterize RNA virus sequences.  A zoo once offered a coloring book featuring … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … resulted from a three-way collaboration that began in 2019, recalled Uri Neri of Tel Aviv University, one of the …
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When “The Blob” Made It Hotter Under the Water
… as hurricanes and droughts. Another one began in late 2013, when a large patch of warm ocean water about a third the size of the United States began forming in … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National …
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Operating Expenses
FY2023 Spending Profile The JGI is funded primarily by the DOE Office of Biological and …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… which microbes are present in a sample, to generate data about which organisms are active, and which microbes are … microbial ecosystems. These communities harbor tens of thousands of different organisms who all consume different … version of a specific chemical, where ordinary Carbon-12 atoms are swapped for the heavier, non-radioactive …
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2024 Progress Report
… (IGB) seen above is home to the DOE Joint Genome Institute (JGI). Researchers from the DOE Systems Biology Knowledgebase … in the IGB. Vision  Lead genomic innovation for a sustainable bioeconomy. Mission  As a U.S. Department of … 2,475 — had active proposals with us, along with more than 15,000 secondary users who made use of our data. We …
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Tiny Earth: A Big Idea for STEM Education and Antibiotic Discovery
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Extreme dimensions — how big (or small) can tailed phages be?
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VEGA Symposium
Hosted by the JGI and co-organized with NIST,  the goal of the Viral … together a “Viral EcoGenomics” community to foster discussion on how to best capture and characterize uncultivated viruses, understand the role of viruses in natural ecosystems, …
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Len Pennacchio
Pennacchio joined the DOE Joint Genome Institute and has focused on applying state-of-the-art molecular methods to … at UC Berkeley. Dr. Pennacchio received his Ph.D in 1998 from the Department of Genetics at Stanford University … in Genome Biology & Technology (AGBT)” … Education … About the Deputy of Genomic Technologies … Selected …
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