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Inspiring STEM Careers Through a Hands-on Everglades Microbiome Study
… Journal publication caps JGI pilot project with fledgling Florida high school … peer through the waters and clouds of insects hover just above. Described as a “river of grass” that stretches … to apply the latest molecular techniques to learn more about the microbial communities in the Arthur R. Marshall …
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Fishing for Novel Cellulose Degraders
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … and unknown. The challenge remains to learn more about what microbes are present in any given … of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported under Contract No. …
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Fields of Breeders’ Dreams: A Team Effort Toward Targeted Crop Improvements
… team led by researchers at the University of Texas (UT) at Austin, the HudsonAlpha Institute for Biotechnology … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … other southern locales did not survive the cold winter of 2019 at the most northern common garden in South Dakota. …
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Biodesign
… The team has three subgroups: Synthetic Biology Lab : a user science group dedicated to user project design, assembly, and quality control Strain … assembly and analysis Overview of biodesign products The JGI Biodesign platform enables users to validate hypotheses …
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PhycoCosm Tutorial
… Learn more about PhycoCosm, the largest interactive collection of … analysis tools developed by the Joint Genome Institute (JGI), a US Department of Energy Office of Science user facility at …
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Building Sphagnum Genomic Resources
… carbon cycling impact.   The Science Enabled by the JGI’s Community Science Program (CSP), researchers are … resources to build up Sphagnum as a plant model system focused on carbon cycling studies, rather than for food or fuel … decomposed matter, and researchers estimate that they hold about 25 percent of the world’s soil carbon. In high …
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Computationally Classifying Fungal Lifestyles
… and feedstocks for biomass and biofuel production. Learning about the ecology and evolution of  Dothideomycetes could … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… of meta-analyses boosted by AI and Machine Learning — JGI researchers and collaborators work to create FAIR … which microbes are present in a sample, to generate data about which organisms are active, and which microbes are … microbial ecosystems. These communities harbor tens of thousands of different organisms who all consume different …
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Exploring the Diversity of the American Prairie’s Switchgrass
… A tall native plant of the North American prairie, switchgrass ( Panicum … dizzying diversity. So, a team of scientists made an ambitious plan to begin to link the plant’s varying traits — height, …
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Calculating the Costs of Multiple Switchgrass Gene Copies
… team led by researchers at the University of Texas (UT) at Austin, the HudsonAlpha Institute for Biotechnology … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, has discovered … to address long-standing evolutionary ecological hypotheses about how C4 perennial grasses like switchgrass respond to …
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Nikos Kyrpides
… at Argonne National Laboratory. Dr. Kyrpides’ research focus on Microbiome Research with an emphasis on Microbiome … S, et al. (2021) Metagenomic compendium of 189,680 DNA viruses from the human gut microbiome. Nat Microbiol . … global metagenomics. Nature . 578:432-436 Roux S. et al. 2019. Cryptic inoviruses are pervasive in bacteria and …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… a computational pipeline to sift and characterize RNA virus sequences.  A zoo once offered a coloring book featuring … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … work resulted from a three-way collaboration that began in 2019, recalled Uri Neri of Tel Aviv University, one of the …
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