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JGI Part of Berkeley Lab Team Awarded Best Use of HPC in Life Sciences
… the full announcement “ Berkeley Lab Receives Multiple 2021 HPCwire Awards ” on the Berkeley Lab Computing Sciences …
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Pinning Down a Piece of Photosynthesis
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Giant Bacteria Found in Guadeloupe Mangroves Challenge Traditional Concepts
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Uncovering Novel Genomes from Earth’s Microbiomes
… this massive dataset, Nayfach clustered the MAGs into 18,000 candidate species groups, 70% of which were novel … viruses in  IMG/VR (Virus) and the GEM catalog, associating 81,000 viruses – 70% of which had not already been …
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RECAP: Keynote Speakers Talk Innovation at 2022 JGI Annual Meeting
… sequence, accounting for 45% of the human genome and 50-80% of certain plant genomes including maize, wheat and …
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Expanding Virophage Diversity
… virophage marker gene MCP, they were able to identify 44,221 total virophage partial sequences, including over 28,000 unique MCP sequences.  Further analysis led to the identification of 328 “high quality” (based on completeness) diverse new …
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JGI Hosts GPU Hackathon in May
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JGI Announces FY26 Large Scale Portfolio for Our Community Science Program
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A Collaboration to Improve Plant Genome Annotations Across Species
… include six more species, so in total, we are looking at 18 different species, which included over 2000 RNA Seq … community is of utmost importance. The scope of handling 18 different species is beyond the capacity of a single lab. … Avinash: It has been publicly available since 2018. There were more than 15 citations even before this was …
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Supporting Global Research into Actinomycetes
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Calculating the Costs of Multiple Switchgrass Gene Copies
… (4X or four copies of the genome) and octoploids (8X or eight copies of the genome). Lovell et al. focused on … it’s been prioritized in breeding efforts, and also because 8X switchgrass is generally thought to harbor less genetic … in 4X switchgrass, we were surprised by the number of 8X individuals that had been collected from field work. When …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… a colored-in page of that book. Published online September 28, 2022, in Cell , a team led by researchers at Tel Aviv …
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