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Uncovering Novel Genomes from Earth’s Microbiomes
… Using this massive dataset, Nayfach clustered the MAGs into 18,000 candidate species groups, 70% of which were novel … viruses in  IMG/VR (Virus) and the GEM catalog, associating 81,000 viruses – 70% of which had not already been …
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Expanding Virophage Diversity
… 44,221 total virophage partial sequences, including over 28,000 unique MCP sequences.  Further analysis led to the identification of 328 “high quality” (based on completeness) diverse new … discussed an early version of the paper at the 2018 Viral EcoGenomics & Applications (VEGA) Symposium. The …
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JGI Hosts GPU Hackathon in May
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JGI Announces FY26 Large Scale Portfolio for Our Community Science Program
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Supporting Global Research into Actinomycetes
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Calculating the Costs of Multiple Switchgrass Gene Copies
… (4X or four copies of the genome) and octoploids (8X or eight copies of the genome). Lovell et al. focused on … it’s been prioritized in breeding efforts, and also because 8X switchgrass is generally thought to harbor less genetic … in 4X switchgrass, we were surprised by the number of 8X individuals that had been collected from field work. When …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… a colored-in page of that book. Published online September 28, 2022, in Cell , a team led by researchers at Tel Aviv …
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A More Intuitive Phytozome Interface
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Ray Turner Completes Last Tour of Lab Duty at JGI
… of Building 310, adding the crowning piece of the entire 80,000 square foot, three-building campus at 2800 Mitchell Drive, which was dedicated in February 2008. Ray won the  Director’s Award for Operations in 2017 in …
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Evolution of a Fungal Gene Expression Regulator
… life, they tracked the evolution of 5mC pathways across 528 species. The researchers found that unlike most flowering …
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Tracking the Origins of Methane-Producing Microbes
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Here, There and Everywhere: Large and Giant Viruses Abound Globally
… heads JGI’s  Microbial Program . The team mined more than 8,500 publicly available metagenome datasets generated from … and characterize uncultivated viruses. For instance, a 2018 study from a JGI-led team uncovered giant viruses in the …
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