Results

Systematic Identification of Gene Families for Use as “Markers” for Phylogenetic and Phylogeny-Driven Ecological Studies of Bacteria and Archaea and Their Major Subgroups
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Niche differentiation of bacteria and fungi in carbon and nitrogen cycling of different habitats in a temperate coniferous forest: A metaproteomic approach
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Horizontal gene transfer of the Mer operon is associated with large effects on the transcriptome and increased tolerance to mercury in nitrogen-fixing bacteria
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Corymbia Genome Expands Terpene Synthesis Knowledge
… or sub-tropical environments, while Corymbia are more abundant in the drier parts of Australia with lower quality … revealed the largest number of TPS genes of any currently sequenced plant, a number closely followed by E. globulus . … list of putative genes from C. citriodora to known TPS gene sequences from Eucalyptus species and other plants. The …
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Seven genome sequences of airborne, bacterial isolates from Antarctica.
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Ian Blaby
… worked with a wide range of eukaryotic algae, archaea and bacteria with a view to developing a deeper understanding of sequence-based gene function. … site ties heme availability to carbon metabolism in cyanobacteria Nature Communications 15(1) 3167. 2024 Simirenko et …
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Evolution of a Fungal Gene Expression Regulator
… in fungi. The Science Changing an A, C, T or G in a genome sequence can lead to changes in protein structures and … The analysis revealed that 5mC in some fungal species is abundant in repetitive DNA and transposons in methylated …
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A Genomic Perspective Across Earth’s Microbiomes Reveals That Genome Size in Archaea and Bacteria Is Linked to Ecosystem Type and Trophic Strategy
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Matt Blow
… genomic technologies and to understand genome function in bacteria. … al. 2024. scMicrobe PTA: Near Complete Genomes from Single Bacterial Cells bioRxiv , 2024.01. 30.577819 2. Dicenzo et … 3. Baumgart et al. 2021. Persistence and plasticity in bacterial gene regulation. Nature methods 18 (12), 1499-1505 …
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Picking Up Threads of Cotton Genomics
… Berkeley National Laboratory (Berkeley Lab) has now sequenced and assembled the genomes of these five cotton … insights on crop improvements at a genetic level, including why having multiple copies of their genomes (polyploidy) is … indicate remarkably high overall sequence similarity yet drastically different fiber morphology between …
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Doubling Down on Known Protein Families
… the novel protein families and novel functions in as-yet unveiled microbes. Harnessing the collective power of … the process hinges on referencing to existing genome sequences.  Some of these proteins are what the scientists … that the majority of these protein families belonged to bacteria and viruses, though 6 million of the sequences …
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Accelerating Metagenomics Discoveries with Deep Learning
… of proteins in order to conduct more efficient protein sequence alignments. He also aims to detect structural similarities in proteins that low sequence identity may belie. The technology he’s using is … Deep learning algorithms can vectorize faces… … so, why not proteins?         …
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