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The INSIG2 rs7566605 genetic variant does not play a major role in obesity in a sample of 24,722 individuals from four cohorts
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GenomeOcean Leverages AI to Decode Nature’s Secret Language
… mimicking an array of microbial life. By leveraging massive user-generated datasets at the JGI and other publicly … forms of communication. This intricate code carries the information necessary for life's processes, making it a … to the financial sector — whether to identify studies and protocols or analyze and predict market trends. “Genomes do …
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Integrating chromatin conformation information in a self-supervised learning model improves metagenome binning
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Promoting the Power of Viral Metagenomics
… and  Nikos Kyrpides , was  recently published in the journal  Annual Review of Biomedical Data Science . The … viruses is by sequencing the bulk DNA or RNA contained in a sample that has been collected from any kind of environment … which sequences represent viruses that were present in the sample. From these data it is possible to answer a wide …
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Statement on the Use of Genomics Data
… to uploading sequence data generated on behalf of its user community to NCBI as well as to the  data portals that … date, whichever comes first. For nearly 40 years, the International Nucleotide Sequence Database Collaboration (INSDC) … NCBI systems. In addition, the JGI issued a Request for Information (RFI), closing April 21st, 2021, to solicit …
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Natural Prodcast Episode 2: The Primer, Part 2
… of Energy Joint Genome Institute, a DOE Office of Science User Facility located at Lawrence Berkeley National Lab. You can find links to transcripts, more information on this episode, and our other episodes at … air, email us at [email protected] .  And because we’re a User Facility, if you’re interested in partnering with us, …
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Graduate Students Get Thesis Research Opportunity at the JGI
… at one of the DOE national laboratories or national user facilities. As a result of the latest call , a total of … mission areas across the 6 Office of Science research programs. Among the recipients of the latest SCGSR award is … the Baker lab to study microbial communities from sediment samples across spatial and temporal scales. Rambo also plans …
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Genome Sequences of Industrially Relevant Saccharomyces cerevisiae Strain M3707, Isolated from a Sample of Distillers Yeast and Four Haploid Derivatives
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Data Ecosystem
… partnerships to offer new capabilities and resources to users through a BER data ecosystem.  A data ecosystem is a … and help unravel these complexities  This ecosystem serves users better in the following ways: Data integration is … by artificial intelligence and other tools. By bringing users together through our systems, we build far-reaching …
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Bacteria and Fungi Divvy Up the Work in Forest Floor
… messenger RNA sequences (transcriptomes) from their soil samples. This gene expression dataset was particularly … out these distractions. Combining genome and transcriptome information allowed the team to have a much more … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National …
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Silver age of GOLD introduces new features
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … genomic data usage is having the appropriate contextual information, or metadata, stored with them. GOLD provides … curated metadata resources for organisms and environmental samples. The database aggregates relevant metadata from …
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Gene Expression: From On-Off Switch to Dial
… systems, expanding the technologies available for other JGI users outside the realm of bioenergy optimization. Summary … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … of betaxanthins. They used combinations of single guide RNA, or a single RNA piece that recognizes a particular area …
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