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Information theory and machine learning illuminate large‐scale metabolomic responses of Brachypodium distachyon to environmental change
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Frederik Schulz
… biogeochemical cycles. He provides his expertise to the JGI user community and supports various user projects in the … on agnostic pathogen detection and surveillance in complex samples. … B.Sc. Biochemistry, University of Applied … Communications. 9 (1), 1-9 Roux et al. (2018) Minimum Information about an Uncultivated Virus Genome (MIUViG). …
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Understanding Wildfire Recovery, Starting in Soil
… , went a step further, using both DNA and messenger RNA (mRNA) sequencing to identify those traits that have … a multi-institutional team of researchers collected soil samples from a wildfire that burned at the Colorado-Wyoming … Institute (JGI). EMSL and the JGI are DOE Office of Science User Facilities located at Pacific Northwest National …
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Trent Northen
… has had leadership roles within large DOE-funded research programs using mass spectrometry for energy and … to provide advanced metabolomic methods available to JGI users.  Dr. Northen’s research is focused on using …
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Model Fern Reveals Insight into DNA Thievery in Ferns
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National …
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Plant-Microbial Interactions Group
… single-cell profiling methods, including single-cell RNA-seq, single-cell ATAC-seq, and spatial transcriptomics … 10.1016/j.celrep.2019.04.054 10.1371/journal.pbio.2002860 … Postdocs: Margot Bezrutczyk (JGI …
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Sequencing Technologies
… to enable biological discovery by the JGI and external DOE users. Adopting the latest  sequencing technologies … output while significantly lowering costs. Staff process samples, perform quality checks, and prep libraries for …
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Microbial Community Analyses Inform Geochemical Reaction Network Models for Predicting Pathways of Greenhouse Gas Production
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JGI@25
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Massie S. Ballon
JGI’s strategic vision, the Institute’s staff and user community. … LBNL Biosciences Area Organizational …
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A Natural Mechanism Can Turbocharge Viral Evolution
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science user facility located at Lawrence Berkeley National … (Berkeley Lab), has looked for DGRs in a broad range of publicly available datasets. They’ve discovered that DGRs are … in single microbial and viral genomes, as well as genomes sampled all at once from the same environment, called …
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Waiting to Respire
… (and at one time, the spouse of Lynn Margulis). The information was then used to predict the metabolic … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, and research scientist Frederik Schulz in … single amplified genomes of Margulisbacteria from marine samples. The research teams opted to collaborate on a single …
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