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Fifteen years of microbial genomics: meeting the challenges and fulfilling the dream
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The genomic standards consortium: bringing standards to life for microbial ecology
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IMG 4 version of the integrated microbial genomes comparative analysis system
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IMG: the integrated microbial genomes database and comparative analysis system
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Genomic sequencing of single microbial cells from environmental samples
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Olpidium, The Key to the Origin of Terrestrial Fungi
… to terrestrial habitats. The work is part of the JGI’s 1000 Fungal Genomes Project, which aims to provide genomic … to the terrestrial ecosystems exposed fungi to numerous new ecological niches and triggered rapid diversification of … known fossil record of land plants and evolved in early microbial biocrust environments.     … The U.S. Department …
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The More the Merrier: Making the Case for Plant Pan-genomes
… the concept, “the more the merrier,” with respect to their genomes. In their base state, they are diploids with two … flowering plants; at least once during their evolution, the genomes of flowering plants multiply. Over time, plants lose many genes after such events, returning their genomes to a diploid state while retaining multiple copies …
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Applying Viral Genomics Expertise to Understanding the Human Virome
… in developing and maintaining the JGI’s  Integrated Microbial Genomics and Microbiomes (IMG/M) system. The … workflows that allow researchers to easily analyze viral genomes. This includes (i) classifying viruses into groups … and understanding viral genomes and their interactions with microbial hosts. The second project, “ A consortium …
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Genomic Encyclopedia of Type Strains, Phase I: The one thousand microbial genomes (KMG-I) project
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How Filamentous Fungi Sense Food
… metabolized in filamentous fungi. The work also suggests a new approach to gene annotation, which then can be explored … tree of life, enriching the work being done as part of the 1000 Fungal Genomes Project. Funding for the project was also provided …
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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
… 1;313(5791):1261-6. doi: 10.1126/science.1128796 Science News of the Day: Stokstad E. Genetics. Genomes highlight plant pathogens’ powerful arsenal . …
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JGI@25: Strengthening Soybean
… to the sequence’s availability via Phytozome. In 2015,  a new and revised version brought the soybean sequence up to … Sainsbury Institute, by annotating not just one but three genomes for P. pachyrhizi , which are available on MycoCosm … Institute, who works extensively on ASR. “Having the genomes of a crop like soybean ensures that what we bring to …
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