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Identifying the Microbial Cleanup Crew at a Superfund Site
… in New Mexico via leakage from a local dry-cleaner. Researchers  identified two bacteria,  Dehalococcoides … ethene. Applying genome sequencing and analysis, the researchers identified other bacteria and microbial … Science Program , they were able to analyze the resulting metagenomic data. (Data from the project are available on the  …
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2022 Progress Report
… seen above is home to the DOE Joint Genome Institute (JGI). Researchers from the DOE Systems Biology Knowledgebase … leading integrative genome science user facility enabling researchers to solve the world’s evolving energy and …   Mission  The mission of the JGI is to provide the global research community with access to the most advanced …
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Climate Change Threatens Base of Polar Oceans’ Bountiful Food Webs
… and gene expression. Sailing from pole to pole on four research cruises, they dipped their self-closing containers … species, including gray whales and humpbacks, migrate to feed in the polar regions. And shrimp dine on the algae that … important thing we need to do.” The study also involved researchers at the following institutions: the Earlham …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… that came with crayons in various shades of white. To researchers searching for sequences of RNA viruses in large … researchers at Tel Aviv University in Israel, the National Center for Biotechnology Information, and the U.S. … store their genetic information in RNA without a DNA stage. “I would argue RNA viruses globally are even less …
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A Collaboration to Improve Plant Genome Annotations Across Species
… As part of that partnership, the JGI and HudsonAlpha researchers led a team that  recently published work on the … transcriptomics. *The HudsonAlpha Genome Sequencing Center works with scientists at the JGI a lot. In fact, … are JGI Flagship Plants, mostly related to biofuels and feedstocks. And then we expanded that to include six more …
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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
… plants The Science In a recent  Nature Genetics paper , researchers focused on the full composition of genes, or … by these high quality reference genome sequences could help researchers better understand related genes in more complex plants that could be applied toward DOE-relevant bioenergy and environmental interests.  Summary As the …
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High-Quality Draft Genome Sequence of the Opitutaceae Bacterium Strain TAV1, a Symbiont of the Wood-Feeding Termite Reticulitermes flavipes
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Emiley Eloe-Fadrosh
… Dr. Eloe-Fadrosh joined the JGI in 2014 to pursue her research interests in microbial ecology and metagenomics. Her current research focuses on leveraging thousands of metagenomic datasets from host-associated and environmental … Emiley Eloe-Fadrosh is the Metagenome Science Program Head at the JGI. Click to learn …
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Mining Metagenomes for Cas Proteins
… and the Innovative Genomics Institute.  The Science Researchers report the discovery of miniature Clustered … by searching for Cas12d homologs across IMG/M’s assembled metagenomic data. It turned out that some of these were … at the National Energy Research Scientific Computing Center , a DOE Office of Science User Facility at Lawrence …
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… Across four forests, researchers have leveraged data from the 1000 Fungal Genomes … Recently, in work  published in  New Phytologist , researchers have pioneered new understanding of which fungi … to trees; plant pathogens colonize living plants to feed on them.  Across the forest types, Martin and his team …
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JGI@25: Strengthening Soybean
… rotation, but soybean ( Glycine max ) also has the advantage of reducing the need for nitrogen fertilizer. These … the soybean genome sequence immediately spurred further research and additional discoveries. Stacey noted that even … grow discolored and rust pustules develop as the pathogen feeds on its soybean host, which is maintained alive. Once a …
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Simon Roux
… Dr. Roux joined the JGI in 2017 to lead viral genomics research as part of the Metagenome Program. His responsibilities include the … where he has engaged in collaborative, interdisciplinary research focused around developing foundational knowledge of … learning framework to maximize host prediction for metagenome-derived viruses of archaea and bacteria. PLoS …
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