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User Support Analysis Group
… for new technology development and JGI user science projects. We perform analysis for diverse experiment types, … epigenomics. Our work varies in scope from the development of highly customized analysis workflows for new product … Our group also performs ‘proof-of principle’ research projects to demonstrate new genomic capabilities. Our group …
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An Automated Tool for Assessing Virus Data Quality
CheckV can help researchers assess virus sequence fragments and data … (metagenomes). However, the quality and completeness of metagenome-assembled virus sequences vary widely. In a … an elephant for the first time. Based on the single body part each blind man touches – a tusk, the ear, or the tail – …
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Massie S. Ballon
… in science communication from UC Santa Cruz. She is one of the Biosciences Area representatives to Berkeley Lab’s … UC Managing Implicit Bias Certification 2020-present, Project Management Professional (PMP) Credential Graduate Certificate, UC Santa …
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Ray Turner Completes Last Tour of Lab Duty at JGI
… as a typical monthly JGI All-Hands Meeting, after a couple of perfunctory items, the agenda went off the rails – … to Ray and most of the rest of the 200-plus Zoom participants. While the virtual mic shifted to Ray for his … at a high level as JGI transitioned from the Human Genome Project to gaining momentum as a national user facility. He …
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JGI Earth Month: Healthy Streams, Nutritious Microbes?
In April 2020, we mark both the 50th celebration of Earth Day on April 22, and DNA Day on April 25. As both … at Colorado State University in Fort Collins. He’s part of a JGI-supported project studying the world’s rivers and their microbial …
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JGI@25: From Life at the Extremes to Editing Genomes
In honor of the JGI's 25th anniversary in 2022, we have revisited a … in the CRISPR-Cas system. For the past few years they have partnered with JGI’s Microbiome Data Science group led by … Jillian Banfield, a fellow Berkeley professor from the De­partments of Earth and Planetary Science and Environmental …
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Finding the Fermenters
Harnessing BER-funded data resources, researchers built an interactive and comprehensive database … 8,300 organisms from multiple sources, including the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE … than 400 cultured rumen prokaryotes from the  Hungate1000 project . They also used the tool to predict possible …
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Training the Next Generation of Talent
… presenting the results of his summer research at the U.S. Department of Energy Joint Genome Institute (DOE JGI), a DOE … challenges UC Merced graduate students with individual projects at the DOE JGI that provide hands-on experience in … a presentation on their data to a large group of DOE JGI researchers at the end of their internships, and are …
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Fields of Breeders’ Dreams: A Team Effort Toward Targeted Crop Improvements
As  reported January 27, 2021 in  Nature , the team led by researchers at the University of Texas (UT) at Austin, the … Institute for Biotechnology (HudsonAlpha), and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE … fellow in the Juenger lab and continues to work on the project from a lab at Michigan State University that is …
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Crysten Blaby-Haas
Blaby-Haas joined the JGI in 2022 as lead of the Biomolecular Materials Initiative, a partnership between JGI and the Molecular Foundry, a … homeostasis. She began her independent research career at Brookhaven National Laboratory (2015) where she co-founded …
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Making a Lichen Together
For the first time, a team analyzes the transcriptomes of a lichen fungus and alga to understand their partnership more clearly. The Science The humble lichen is a … deciphering their internal molecular mechanisms can help researchers better model global carbon and nitrogen cycling. …
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The International Virus Bioinformatics Meeting 2020
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