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Propagation of viral genomes by replicating ammonia-oxidising archaea during soil nitrification
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Thermal adaptation of soil microbial growth traits in response to chronic warming
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
… to address climate change: pulling atmospheric carbon into soil and boosting biofuel feedstocks with less fertilizer. … In order to do so, these organisms share space at cellular scale: fungi stretch a network of tendrils called … with Cole and Serrano to collect and analyze the single nuclei and spatial transcriptomics data this work …
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Natural Prodcast Episode 15: Katherine Duncan
… Right. Kate Duncan: And you can do that across different samples. And it has a bunch of databases, because it’s … both of those things have still very much done to be excellently. Dan Udwary: For sure. Kate Duncan: Not that …
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Engagement Webinar: Utilizing long-read sequencing for metagenomics and DNA modification detection
… This webinar focused on how the JGI employs single-molecule, long-read DNA sequences to aid with genome … custom analysis, i.e. is not part of the standard analysis pipeline but can be done on request by the PI. We currently … with both, and generally it’s more efficient just to make a single library tape. If you do have both Illumina and …
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Virus Discoveries that Keep Getting Bigger
… Sequence-based studies — from metagenomics to single-cell work — have quickly accelerated understanding of giant … novel viral genomes from freshwater, sewage, and marine samples. In addition to highlighting many viruses …
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Massive lateral transfer of genes encoding plant cell wall-degrading enzymes to the mycoparasitic fungus Trichoderma from its plant-associated hosts
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Metagenomes, Metatranscriptomes, and Metagenome-Assembled Genomes from Chesapeake and Delaware Bay (USA) Water Samples
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Extensive sampling of basidiomycete genomes demonstrates inadequacy of the white-rot/brown-rot paradigm for wood decay fungi
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Microfluidic-based mini-metagenomics enables discovery of novel microbial lineages from complex environmental samples
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Extensions of BLUP Models for Genomic Prediction in Heterogeneous Populations: Application in a Diverse Switchgrass Sample
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New Research Sheds Light on Diversity in the Deep Sea
… and the University of Wisconsin-Madison collected 40 samples from five oceanic regions to better understand how … discovered genera of bacteria and archaea. Many of the samples shared a high prevalence of genes involved in sulfur … 339, lead Peter Girguis) for sequencing several of the samples. …
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