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… Database provides details on river microbes in 90% of US … Science In a recent Nature paper , researchers describe a dataset of microbial genomes sampled from rivers covering … The 3.8 trillion bases or Terabases of sequencing data, along with geochemical and geospatial measurements …

… Rauer Islands. Additionally, they compared metagenome data generated from samples collected at four Rauer lakes to … level genomic variation. The genome and metagenome data are available through JGI’s Integrated Microbial Genomes & Microbiomes (IMG/M) platform. These data allowed researchers to define a haloarchaea …

… have diversified into an estimated 2–6 million species — dwarfing the diversity of plants. To put this evolutionary … Berkeley National Laboratory (Berkeley Lab). “These data can also be used for machine learning and artificial … Fungal Genomes Project established crucial phylogenetic frameworks spanning the entire kingdom. Stephen Mondo, a …

… or DRI for short.  A kaleidoscope of structure-function data To study DRI experimentally, Blaby-Haas, Grosjean and … Scientists at Stanford’s SSRL were able to provide crucial data supporting the presence of the zinc-mirror heme site — … loses this protein, energy metabolism is disrupted. These data create a multilayered understanding of this Domain …

… the microbes that play roles in the methane cycle. Their data report, which provides the only known reference microbiome data sets for the Loxahatchee Refuge,  was published in the … metagenome assembly, and even an introduction to data analysis using the  IMG/M system . A Comprehensive …

… organisms in the ocean, because I was always swimming or surfing. And you know, 25 hours a day we’re at the beach … before you see toxin. And we have some preliminary data with other samples that we do see days to a week of a …

… and chemistry for advanced analysis, modeling, and data integration. Dr. Bowen’s expertise in spectral … Northen, T., & Bowen, B. (2015). Analysis of metabolomics datasets with high-performance computing and metabolite … important ions and positions in mass spectrometry imaging data using CUR matrix decompositions. Analytical chemistry, …

… the JGI’s primary point of contact for all High-Throughput Data Generation Platforms (Sequencing, Single Cell, …

… sequenced without pooling, which yields ~ 180 Gb of data per library. Q: How much DNA/coverage is required for … Methylation detection currently only works using subread data, PacBio is working on support to use CCS data as input. Data analysis Q:  What types of analysis …

… eukaryotic microbes and viruses in environmental sequence data. Dr. Schulz employs multi-omics (metagenomics, … a temperate dimictic lake. Microbiome . Camargo A. et al. 2023. Identification of mobile genetic elements with …

… switchgrass for bioenergy production. Building on the framework provided by our new switchgrass manuscript , we plan to use existing data as well as generating additional genomic resources to …