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2024 Progress Report
… the DOE Systems Biology Knowledgebase (KBase), the National Microbiome Data Collaborative (NMDC), and Berkeley Lab … expertise to support the global research community in studies of complex biological and environmental systems. We … April 2024 — through serving an increased number of users with a record output of products, making data easier to …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… on microbial communities than ever before — especially with the prospect of meta-analyses boosted by AI and Machine … nitrogen and carbon, or how freshwater ecosystems process methane and organic matter.  However, to get all of the … (LLNL), the Microbes Persist: Systems Biology of the Soil Microbiome  Science Focus Area (SFA), is producing hundreds …
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Natural soil microbiome variation affects spring foliar phenology with consequences for plant productivity and climate‐driven range shifts
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Ecosystem Fabrication (EcoFAB) Protocols for The Construction of Laboratory Ecosystems Designed to Study Plant-microbe Interactions
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VISTA Region Viewer (RViewer)—a computational system for prioritizing genomic intervals for biomedical studies
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Fungal ecological strategies reflected in gene transcription ‐ a case study of two litter decomposers
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Data Policy
… visible and available in JGI systems. Users not involved with the proposal under which the data were generated (e.g. … publication of the data. In short, those users not involved with the proposal under which the data were generated who …
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Virus-Microbe Interactions of Mud Island Mangroves
… laboratories or national user facilities. Baker had worked with the JGI through a Community Science Program (CSP) … on that. “The purpose of this CSP is to better understand methane cycling in mangrove wetlands in south Texas,” he … CSP, but also look at how viruses might be influencing the methane cycling within these mangrove wetlands.” A chapter …
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A Genomic Perspective Across Earth’s Microbiomes Reveals That Genome Size in Archaea and Bacteria Is Linked to Ecosystem Type and Trophic Strategy
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Decomposing a San Francisco estuary microbiome using long-read metagenomics reveals species- and strain-level dominance from picoeukaryotes to viruses
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Effects of Polar Light Cycle on Microbial Food Web
Populations of Antarctic lake microbial communities change with the seasons. The Science Light-harvesting bacteria … cycling takes place only on a microbial level. Previous studies focused on the Southern Ocean have found that in … for metagenomic sequencing. A study  recently published in  Microbiome shows that the way nutrients flow through the …
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Understanding Wildfire Recovery, Starting in Soil
… a wildfire burns, recovery begins at the forest floor. Within the soil, a microbiome of bacteria, viruses and fungi process carbon and … model and track the forest recovery process.  Summary Most studies on post-wildfire soil microbiomes have focused on …
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