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… plants can’t run away, they’ve evolved these really tough cell wall materials that keep microbes — and the enzymes that would be produced by microorganisms — out,” said JGI user/collaborator …

Since 2019 Dr. Blaby heads the DNA synthesis platform at the Joint Genome … from Chlamydomonas reinhardtii reveals continuous cell and metabolic differentiation. The Plant Cell . 27: 10, 2743-2769. 2015 Blaby et. al., The …

… work? The project was a multi-institutional effort led by then-graduate student Cory Schwartz and his advisor Ian … of  Y. lipolytica ’s genes to be required for growth. By contrast, an initial screen using an unvetted library … be applied to other eukaryotes. … This work was supported by DOE Joint Genome Institute grant  CSP-503076 (IW, HA, and …

… a novel approach to better understand microbial communities by looking at protein function within them. The work was led … through the publicly available  Integrated Microbial Genomes & Microbiomes (IMG/M) database, they successfully … has been no real analysis of protein families from metagenomes per se.”  Recently, other research teams have …

… habitat range. But at what cost?  A collaborative team led by researchers at the University of Texas (UT) at Austin, … and evolutionary consequences. A previous study conducted by our research team surveying the genomic and phenotypic … the diversity present in 4X switchgrass, we were surprised by the number of 8X individuals that had been collected from …

… in state-of-the-art analytical methods in this area, by means of theoretical lectures and seminars as well as … devoted to training in the use of the Integrated Microbial Genomes & Microbiomes (IMG/M) system, presented by Natalia Ivanova and Rekha Seshadri. …

In this episode, undergraduates adopt genomes that the JGI sequenced, but never published in the literature. These students analyze the genomes, write reports, and publish first-author papers, … Soghomonian share what it was like to take on one of these genomes.  …

… to large ecosystem-level processes for the first time. By collecting data from 27 different poplar ( Populus … (Berkeley Lab). All of this information — 318 metagenomes, 98 plant transcriptomes and 314 metabolomic … and DE-AC05-76RL01830 (PNNL). … BioScales project on JGI Genomes Online Database … BioScales project on National …

… data management infrastructure of the Integrated Microbial Genomes (IMG) family of systems. Before joining LBNL in … et al. IMG/VR v4: an expanded database of uncultured virus genomes within a framework of extensive functional, … TBK, Chen I-MA et al. IMG/PR: a database of plasmids from genomes and metagenomes with rich annotations and metadata. …

… this time aligning it with over 50 other diverse sorghum genomes. Deep sequencing and genetic linkage analysis … improve the genome’s accuracy, and increase its length by 29.5 Megabasepairs. 2017: Pan-genome analysis of sorghum … understand what genes exist across the species. Earlier pan-genomes for other plants, like the soybean relative Glycine …

… genome duplication occurs within a single species. By contrast, “allopolyploids” arise when different ancestral … developed a method to correctly identify polyploid subgenomes without needing to know the genomes of their ancestors. The method was tested on a …

Metagenome-assembled archaeal genomes provide new insights into an ancient metabolism. … Nature Microbiology , they mined the Integrated Microbial Genomes & Microbiomes (IMG/M) database maintained by the U.S. Department of Energy (DOE) Joint Genome …