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FunGAP: Fungal Genome Annotation Pipeline using evidence-based gene model evaluation.
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Genomic profiles of four novel cyanobacteria MAGs from Lake Vanda, Antarctica: insights into photosynthesis, cold tolerance, and the circadian clock
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Proteome profile of the endomembrane of developing coleoptiles from switchgrass (Panicum virgatum)
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efam: an expanded, metaproteome-supported HMM profile database of viral protein families.
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Distinct temporal diversity profiles for nitrogen cycling genes in a hyporheic microbiome
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Prokaryotic community profiles at different operational stages of a Greek solar saltern
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JGI@25 RECAP: 2022 Annual Meeting features historical perspectives on JGI’s 25 years
… from its beginnings in the sequencing for the Human Genome Project out to the future of the institution. Their … years fueling discovery, Anderson looked toward the JGI’s next decades of science with enthusiasm. He pointed toward … in 1997, now takes roughly one second. “It isn’t just the generation of vast troves of data, it’s the new areas of …
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Shared Genomic Regions Between Derivatives of a Large Segregating Population of Maize Identified Using Bulked Segregant Analysis Sequencing and Traditional Linkage Analysis
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Computationally Classifying Fungal Lifestyles
Machine learning methods were applied on sequenced fungal genomes to classify gene families. The Science As a proof of … (From Haridas S et al.  Studies in Mycology , 2020.) Using whole genome data from newly sequenced genomes, they …
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An Automated Tool for Assessing Virus Data Quality
… fragments and data quality. The Science Through advances in sequencing technologies and computational approaches, more … recovered and identified from environmental samples (metagenomes). However, the quality and completeness of … host organism. With the virus-host boundary clearly defined using functional annotation methods, it was possible to …
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Mindfully Moving JGI
… labs in one long building at Walnut Creek, after countless generations of sequencing platforms (up to 120 sequencing … at its peak, all the machines were switched off. Over the next two weeks, they were crated, shipped to, and then … cleanup.lbl.gov .     … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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JGI Contributes Eight to 2023 Highly Cited Researchers list
Congratulations to the 2023 Highly Cited Researchers from the JGI recognized for … influence in their chosen field or fields through the publication of multiple highly cited papers during the last … were all instrumental in the development of the Novel Metagenome Protein Families (NMPF) Catalog . Published in the …
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