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Data Ecosystem
… The JGI is leveraging its current partnerships to offer new capabilities and … to users through a BER data ecosystem.  A data ecosystem is a connected resource where data from different organizations is discoverable and accessible. Linking the resources of powerful institutions like the JGI, …
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Dealing with Drought: Uncovering Sorghum’s Secrets
… genes respond to drought stress. The Science Fields of drooping stalks and cracked earth are becoming common images in … for agricultural products.  Sorghum bicolor (L.) Moench is an African grass that adroitly handles droughts, floods … watering conditions, and then collected root, leaf and rhizosphere (soil surrounding the root) samples from the …
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Ian Blaby
… Since 2019 Dr. Blaby heads the Biodesign Platform at the … engineering and bioinformatic tool development/data analysis for synthetic biology and functional genomics. Prior to … he focused on functional genomics of phototrophs. Through this and post-doctoral positions at University of Florida and …
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How Filamentous Fungi Sense Food
… Tracing gene regulatory networks in the model fungus  Neurospora … crassa, and to identify and decide on the order in which this fungus breaks down plant cell wall materials including … lignin, cellulose and hemicellulose. The Impact N. crassa is the model organism for filamentous fungi, all of which …
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Silver age of GOLD introduces new features
… The JGI’s Genomes OnLine Database celebrates 25 years as a vital resource for … and enabling large-scale comparative genomics analysis initiatives. GOLD not only curates sequencing projects … a broad range of activities from proposal intake to publication. Information is also obtained and cross-checked …
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JGI@25: Using Team Science to Build Communities Around Data
… In honor of the JGI's 25th anniversary in 2022, we have … genomes that are both large and complex. The first publication of a genome generated by the OGG initiative — … Filling in the Plant Tree of Life … Genome Insider …
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Engagement Webinar: Harnessing JGI’s Metabolomics Capabilities
… The JGI Engagement Webinar held November 5, 2020 (watch the  video below, captions are available) spotlighted the metabolomic analysis capability available through the  Community Science … an untargeted metabolomic analysis directly from the rhizosphere in natural soil? A:  It depends on the soil. …
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DNA Synthesis Program
… The JGI’s DNA Synthesis Program supports a wide range of projects, from single-gene synthesis to the synthesis of entire chromosomes, advancing the … The DNA Synthesis Program plays a central role in advancing functional genomics, focusing on developing … Genome to Enzymes and Pathways focuses on discovering and characterizing enzymes and pathways vital to …
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Doubling Down on Known Protein Families
… Using a novel computational approach, researchers confirm microbial diversity is wilder than ever. Imagine researchers exploring a dark … single beam. When it comes to microbial communities, scientists have historically been unable to see beyond the beam — … Facility  located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in support of DOE …
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A Cost-Efficient Way to Convert Yeast into a Cell Factory for Hydroxyapatite
… Innovative technology from this biomanufacturing collaboration is available for licensing. The Science In  Nature … This work was supported by laboratory-directed research and … The work conducted by the U.S. Department of Energy (DOE) Joint Genome Institute ( https://ror.org/04xm1d337 ), a DOE …
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The More the Merrier: Making the Case for Plant Pan-genomes
… system traces polyploid genome evolution. Flowering plants abide by the concept, “the more the merrier,” … parents or duplication, also known as “polyploidy,” is common among flowering plants; at least once during their … state while retaining multiple copies of some genes. This polyploidization process is ongoing and many plants, …
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Rex Malmstrom
… Dr. Malmstrom is a Staff Scientist and leader of the Microscale Applications group. Before joining the JGI in 2010, he made the first ever measurements … Ph.D. in Marine Biology/Biochemistry, University of Delaware BA in … Serrano et al. 2024.  Spatial co-transcriptomics reveals discrete stages of the arbuscular mycorrhizal symbiosis. …
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