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2024 Progress Report
… The Integrative Genomics Building (IGB) seen above is home to the DOE Joint … of products, making data easier to access and use, and by investing in the latest advanced genomic capabilities to … processed 13,700 metabolomics samples With our users, 247 publications were published   …
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Nigel Mouncey
… include strategic planning and ensuring program excellence. The Director represents the JGI to its various … World Bio Markets Bio-based Business Person of the Year Publications Committee Chair (2016- ), Society for … for improved growth rate and growth yield on glucose by elimination of gluconate formation. Appl Environ …
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How Filamentous Fungi Sense Food
… model fungus  Neurospora crassa . The Science A team led by researchers at the University of California, Berkeley … to reconstruct and model gene regulatory pathways used by the filamentous fungus  Neurospora crassa, and to … decide on the order in which this fungus breaks down plant cell wall materials including lignin, cellulose and …
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DAP-seq Drives Robust Mapping of Gene Regulation
… allow simultaneous measurement of multiple samples in a single experiment — and integrated these data with single-cell gene expression maps. Together, the scale of data enabled by these approaches creates a vast resource offering … Berkeley National Laboratory, is committed to advancing genomics in support of DOE Office of Science Biological and …
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Finding the Fermenters
… community brings together the data resources enabled by the DOE Biological and Environmental Research (BER) … prokaryotes, including two bacteria isolated by their lab. KBase was used to rapidly assemble and … This work was supported by the United States Department of Agriculture National …
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High Five: Celebrating the JGI-UC Merced Genomics Internship Program
… Participation (CAMP) program, a statewide initiative funded by the National Science Foundation (NSF) that supports … Jess Jarett, a postdoctoral fellow in Tanja Woyke’s Single Cells Group who mentored 2018 intern Akshay Paropkari, …
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Metabolomics
…   Metabolomics strengthens -omics technologies at the JGI by identifying the actual molecules present in an …
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Evolutionary Analyses of Gene Expression Divergence in Panicum hallii: Exploring Constitutive and Plastic Responses Using Reciprocal Transplants
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Building Sphagnum Genomic Resources
… potential carbon cycling impact.   The Science Enabled by the JGI’s Community Science Program (CSP), researchers … and climate is estimated to be larger than any other single plant genus. Peatlands accumulate partially … unparalleled model system for ecological and evolutionary genomics .” Understanding the nature and genetic basis of …
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Cataloging the Microbes that Manage the Health of River Systems
… This work was partially supported by awards from US Department of Energy (DOE) Office of … DE-SC0021350, and DE-AC02-05CH11231. Partial support by US National Science Foundation awards DEB1840243, … Science Program and the University of Colorado Anschutz’s Genomics Shared Resource. The work (proposal …
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JGI@25 RECAP: 2022 Annual Meeting features historical perspectives on JGI’s 25 years
… Kuhn in his 25th Anniversary presentation. “Those driven by new tools and those driven by new concepts.” Patrinos … which researchers can access multiple DOE facilities with a single proposal. From the vantage point of JGI’s 25 years … “Nigel [Mouncey] and his team have continued that excellence.” Drell said that, during his time as program …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… in large data sets, their work may be akin to finding a single snowflake on a colored-in page of that book. Published online September 28, 2022, in Cell , a team led by researchers at Tel Aviv University in Israel, the … Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy …
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