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From Sample Shipments to Sequences – A Tour of the JGI’s Sequencing Pipeline
… Every year, the JGI sequences around 35,000 samples — from plants, algae, bacteria, archaea, fungi, viruses — to support scientists around the world. Most of those researchers send their samples in from afar, … with names — but not doors — and robots handle a bunch of benchwork. …
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A Community Resource for Secondary Metabolite Researchers
… user engagement. The Science In addition to the core set of "primary metabolites"—chemical compounds shared by most … more than 13 million BGCs in the catalog at the time of publication, it is the largest repository of BGC sequence data from over 1.3 million publicly available bacterial and …
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Expanding Horizons with the 2025 JGI-UC Merced Internship Cohort
… Interns contributed to a number of projects, from refining lab protocols at the bench to applying … Crysten Blaby-Haas Project:  Intermolecular isopeptide bond detection Socheata Hour Mentors: Jonelle Basso, Heejung Cho …
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Dissolved Inorganic Carbon-Accumulating Complexes from Autotrophic Bacteria from Extreme Environments
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The standard operating procedure of the DOE-JGI Metagenome Annotation Pipeline (MAP v.4)
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Toward an Online Repository of Standard Operating Procedures (SOPs) for (Meta)genomic Annotation
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Annotation and sequence diversity of transposable elements in common bean (Phaseolus vulgaris)
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Functional Annotation of Fibrobacter succinogenes S85 Carbohydrate Active Enzymes
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Doubling Down on Known Protein Families
… online Oct. 11, 2023 in  Nature highlights the vast array of functional diversity of microbes through a novel approach … through the publicly available  Integrated Microbial Genomes & Microbiomes (IMG/M) database, they successfully … ‘Dark Matter’ Microbial communities living everywhere from soils and stomachs to the deep sea are capable of doing …
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Quantitative DNA Stable Isotope Probing Identifies Active Microorganisms Assimilating Volatile Fatty Acids in Full-Scale Enhanced Biological Phosphorus Removal Processes
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Complete Genome Sequence of Nitrosospira multiformis, an Ammonia-Oxidizing Bacterium from the Soil Environment▿ †
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The Paleozoic Origin of Enzymatic Lignin Decomposition Reconstructed from 31 Fungal Genomes
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