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High functional diversity among Nitrospira populations that dominate rotating biological contactor microbial communities in a municipal wastewater treatment plant
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Refinement of the “Candidatus Accumulibacter” genus based on metagenomic analysis of biological nutrient removal (BNR) pilot-scale plants operated with reduced aeration
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Taking Stock of the Known and Unknown Microbial Space
… Metagenomic datasets could help map out microbial diversity … the microbial diversity we know about, and proposes a path forward to curate and cultivate what is still unknown.  “We … is a wake-up call to revive the art of hands-on microbiology and experimental validation.  Microbes run the …
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You Can Move, But You Can’t Hide
… Researchers at the JGI develop a tool to quickly and accurately … and spread from cell to cell. Two of the most common forms of MGEs are viruses and plasmids. They can be found in … classification framework that combines and builds on two standard techniques for identifying viruses and plasmids. …
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A plant host, Nicotiana benthamiana, enables the production and study of fungal lignin-degrading enzymes
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Integrative genomic mining for enzyme function to enable engineering of a non-natural biosynthetic pathway
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The Sphagnome Project: enabling ecological and evolutionary insights through a genus‐level sequencing project
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Metabolic model predictions enable targeted microbiome manipulation through precision prebiotics.
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FISH–FACS Enabled Targeted Recovery of Genomes from Uncultivated Environmental Microbial Populations
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JGI@25: Building a Better Bean
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable … and stress-resistance as well as nitrogen fixation; and has enabled discoveries in additional crops such as peanuts, … molecular markers, and slow-darkening has become standard for pinto beans. These beans cook faster, retain …
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Dan Rokhsar
… Dr. Rokhsar joined the JGI in 2000 as the founding Associate Director for Computational Genomics, and led the computational … shifted from condensed matter physics to computational biology, genomics and evolutionary biology. Dr. Rokhsar’s … AB in Physics, Princeton University, NJ MS in Theoretical …
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Soil virus offers insight into maintaining microorganisms
… Using the IMG/M data portal, researchers have identified a virus protein tied … to carbon cycling.  The Science Through a collaborative effort, researchers have identified a protein in soil viruses that may promote soil health. The work was enabled in part by a community data portal of the U.S. …
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