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Combining Hadoop with MPI to Solve Metagenomics Problems that are both Data- and Compute-intensive
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iVirus 2.0: Cyberinfrastructure-supported tools and data to power DNA virus ecology
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Searching for fat tails in CRISPR-Cas systems: Data analysis and mathematical modeling
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acdc – Automated Contamination Detection and Confidence estimation for single-cell genome data
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Genomes OnLine Database (GOLD) v.6: data updates and feature enhancements
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Best practices for the execution, analysis, and data storage of plant single-cell/nucleus transcriptomics
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GNPS Dashboard: collaborative exploration of mass spectrometry data in the web browser
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Enlarging Windows into Understanding Gene Functions
JGI innovates protocol revealing how genetic variations in sequences affect traits. In a text file, the rows of letters … array of combinations, are unremarkable, save perhaps for the absence of all the other letters of the alphabet. … (cDNA), reducing the amount of time it takes to produce a dataset from months to days and halving the total reagent …
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Sequence to Function: Applications and Analysis for the Future (SFA²F)
The Sequence to Function: Applications and Analysis for the … discussions, workshops, and informal networking events. JGI will present both a genome center talk and a tech talk. …
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The Expanding Universe of Methane Metabolisms in Archaea
… of the Earth’s atmosphere and regulating the global climate for life to flourish. For Guillaume Borrel and Simonetta … the Integrated Microbial Genomes & Microbiomes (IMG/M) database maintained by the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, for publicly …
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How Filamentous Fungi Sense Food
Science A team led by researchers at the University of California, Berkeley used a multi-omics approach to reconstruct … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … genes. This first paper integrating multi-omics data from this JGI fungal ENCODE proposal was  recently …
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Gene Context Analysis in the Integrated Microbial Genomes (IMG) Data Management System
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