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A Complex Confection Decoded: Sugarcane Reference Genome
… can work toward advancing sugarcane biotechnology. The Science Considered the world’s most harvested crop by … cultivar R570 has been generated and  reported in the journal  Nature . The work led by researchers at Australia’s … the HudsonAlpha Institute for Biotechnology and the Arizona Genomics Institute. The work was partly enabled by the JGI’s …
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2024 Progress Report
… The Integrative Genomics Building (IGB) seen above is home to the DOE Joint … Microbiome Data Collaborative (NMDC), and Berkeley Lab Biosciences Area are also co-located in the IGB. Vision  Lead … complex biological and environmental systems. We optimize our service to the community through responsibly managing …
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Covariation of hot spring geochemistry with microbial genomic diversity, function, and evolution
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Improving the Cacao Genome and Phytozome
… Cocoa Organization (ICCO), global cocoa bean production in 2017-2018  was 4.6 million metric tons . The global chocolate … In 2010, a draft first genome of  Theobroma cacao  – the tree that produces cacao beans – was released by a Mars, … working to address some of the most pressing challenges of our time. For more information, please visit  …
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Cultivating Symbiotic Antarctic Microbes
… they are symbionts and not free-living organisms. The Science Researchers employed multiple microbiology and … cycle. The JGI is sequencing large numbers of microbes and microbial communities that contribute to carbon cycling, and … to that of a free-living organism. First discovered in 2011, Nanohaloarchaea are part of the DPANN (Diapherotrites, …
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10 From JGI on the 2019 Highly Cited Researchers List
… Clarivate Analytics, formerly the IP & Science arm of Thomson Reuters, has released their 2019 list … categories Microbial Systems research group lead and User Programs Deputy Susannah Tringe, Cross-Field category … for an uncultivated virus genome, including the source, methods of identification of the virus genome, and …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… As SIP experiments shed more light on microbial communities than ever before — especially with the … process. The isotope labeling incubations can take hours to months, followed by weeks of tricky, laborious lab … Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National …
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Understanding Wildfire Recovery, Starting in Soil
… at the soil microbes present a year after a wildfire. The Science After a wildfire burns, recovery begins at the … carbon and nitrogen, paving the way for future plants and trees to grow. However, fire changes the microbes within the … return to health, researchers have taken a look at microbial genomes across a spectrum of burned soils. By …
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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
… genetic toolkit of ancestral and present-day plants The Science In a recent  Nature Genetics paper , researchers … plant lineages makes it ideal for comparative genomics studies, offering insight into genes critical for … of the  Marchantia pangenome, scientists developed a resource that associates plant’s genetic variants with specific …
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Horizontal gene transfer and gene dosage drives adaptation to wood colonization in a tree pathogen
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Institutional User Agreements
… signing official must have the legal authority to commit your institution or organization to the terms and conditions … or Legal Representative. Please check with your unit director or supervisor for the appropriate contact … with an active JGI User Agreement older than January 2024 will be required to execute a 2024 version .  The …
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Defining a Pan-Genome for Antarctic Archaea
… broadens understanding of Antarctic biogeography. The Science Haloarchaea flourish in hypersaline environments, and researchers are … adapt from marine to hypersaline conditions by studying the microbial communities in Antarctic lakes, some of which have … Research Council (DP150100244) and the Australian Antarctic Science program (project 4031). The work conducted by the US …
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