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Metagenomics uncovers gaps in amplicon-based detection of microbial diversity
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Constraining the oxygen requirements for modern microbial eukaryote diversity
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
As SIP experiments shed more light on microbial communities than ever before — especially with the … process. The isotope labeling incubations can take hours to months, followed by weeks of tricky, laborious lab … Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National …
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Dan Rokhsar
Dr. Rokhsar joined the DOE Joint Genome Institute in 2000 as the founding Associate Director for Computational Genomics, and led the computational efforts directed towards … is focused on understanding the origin, evolution, and diversity of plants and animals by combining computational …
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An Automated Tool for Assessing Virus Data Quality
… assess virus sequence fragments and data quality. The Science Through advances in sequencing technologies and … the genomes of these viruses and associate them with their microbial hosts. However, assembling viral genomes from … perform functional assessment, host prediction, and phylogenetic analysis. The development of CheckV helps …
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Exploring the Diversity of the American Prairie’s Switchgrass
… a complex genome and, as a species, encompasses dizzying diversity. So, a team of scientists made an ambitious plan …
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The core metabolome and root exudation dynamics of three phylogenetically distinct plant species
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Ancient Algae Reveal Secrets of Plant Evolution
… helped plants conquer land over 600 million years ago. The Science By studying the genes of land plants’ closest algal … relative,  Zygnematophyceae , scientists have enhanced our understanding of how early plants transitioned from … three strains of  Zygnema circumcarinatum . Published  May 2024 in  Nature Genetics by an international research …
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Metagenomic reconstruction of nitrogen and carbon cycling pathways in forest soil: Influence of different hardwood tree species
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Antisense Down-Regulation of 4CL Expression Alters Lignification, Tree Growth, and Saccharification Potential of Field-Grown Poplar    
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JGI-UC Merced Interns Share Their 2021 Experiences
JGI mentors to investigate rigorous research projects, hone science presentation skills, and participate in professional … the goal of inspiring students to embark on a career in genomics and to help foster a diverse future workforce in … P. hallii Mutant Library … Evaluation of Binning Tools for Microbial Eukaryotes in Metagenomes … Functional exploration …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … metatranscriptome datasets from the JGI’s Integrated Microbial Genomes & Microbiomes (IMG/M) system. “We then looked into many more samples and refined our methodology,” Neri said. “Our team grew and so did the …
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