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Pinning Down a Piece of Photosynthesis
Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … National Laboratory’s National Synchrotron Light Source II, and SLAC National Accelerator Laboratory’s … are cutting edge in terms of analysis and the fascinating results that we managed to compile,” Grosjean said.  With …
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For the Tiniest Archaea, A Genomic Switch of Friend or Foe
… between some archaeal hosts and their hitchhikers. The Science Within the archaeal domain, there is a group of tiny … Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … through The Paul G. Allen Frontiers Group, the National Science Foundation (MCB-1244557 to J.A.D.) and the Lawrence …
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Fishing for Novel Cellulose Degraders
… hook” single-cell genomic approach to bioprospecting. The Science One of the most vital pieces of equipment for fly … enzyme activity assay. The work was  reported in  The ISME Journal . While the screen caught several microbes from known … contract DE-FC02-07ER64494. EG is supported by the NIGMS Biotechnology Training Program (NIH 5 T32 GM008349) at the …
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You Can Move, But You Can’t Hide
… mobile genetic elements like plasmids and viruses. The Science Mobile genetic elements (MGEs) are genetic entities … A software tool  recently described in  Nature Biotechnology  called geNomad identifies and classifies MGEs … National Laboratory (Berkeley Lab), with computing resources provided by NERSC, another user facility at Berkeley …
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A Natural Mechanism Can Turbocharge Viral Evolution
… allows microbes to adapt to changing environments. The Science The first step in the deadly dance between a virus … under contract no. DE-AC02-05CH11231. This research used resources of the National Energy Research Scientific Computing … by the National Science Foundation’s XSEDE computing resource (award DEB170007), and through a Challenge Grant from …
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JGI Launches Latest Strategic Plan
… — A Vision for Integrative and Collaborative Genome Science , the culmination of an eight-month intensive … and incubation process. “JGI’s ‘vision’ is truly a tour de force,” said Mary Maxon, Biosciences Associate … of a Secondary Metabolites research group (pages 47-49). “Our hope is to circulate this document widely within the …
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The JGI Data Portal: Improving User Experience
… agile collaboration between the JGI and the information technology company Truss has resulted in the JGI Data Portal … around the world, the JGI Genome Portal is a critical resource — it provides access to all of JGI’s genomic databases … of Energy Joint Genome Institute, a DOE Office of Science User Facility  located at Lawrence Berkeley National …
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Green Algae Reveal One mRNA Encodes Many Proteins
… reported in the Proceedings of the National Academy of Sciences , a team of researchers has found numerous examples … zofingiensis . “I was scrutinizing the genes of one of our species of algae and kept seeing what looked like … DOE’s Office of Science is the largest supporter of basic research in the physical sciences in the United …
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An Automated Tool for Assessing Virus Data Quality
… assess virus sequence fragments and data quality. The Science Through advances in sequencing technologies and … viral genomes from metagenomes is challenging and often results in highly fragmented data, which limits the ability … from the host organism. As reported in Nature Biotechnology , a team from the U.S. Department of Energy (DOE) …
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Calculating the Costs of Multiple Switchgrass Gene Copies
… of Texas (UT) at Austin, the HudsonAlpha Institute for Biotechnology (HudsonAlpha), and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, has discovered that the candidate … evolutionary consequences. A previous study conducted by our research team surveying the genomic and phenotypic …
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New Vision, New Mission, New Plan: The JGI’s Next Five Years
… bioeconomy, leveraging partnerships to advance foundational science, creating opportunities for the global research … and stimulate a bioeconomy, where renewable, biological resources drive processes, products, and services.  Advancing … will bridge fundamental knowledge gaps to advance biotechnology and biomanufacturing.  As a leader in genomics …
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DOE JGI Interns Share Their Summer Experiences
DOE JGI’s efforts to promote diversity and inclusion in the sciences, among the interns were two undergraduate students … . CAMP is a statewide initiative funded by the National Science Foundation (NSF) and supports underrepresented minorities in science, technology, engineering and math (STEM) fields. This summer, …
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