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Calculating the Costs of Multiple Switchgrass Gene Copies
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… a colored-in page of that book. Published online September 28, 2022, in Cell , a team led by researchers at Tel Aviv …
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A More Intuitive Phytozome Interface
… version of the JGI’s plant data portal. On August 6, 2021,  version 12 of Phytozome will be retired, and  version … v12 NOT available (via URL forwarding) in v13? A total of 7 genomes present in v12 are not available interactively in …
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Ray Turner Completes Last Tour of Lab Duty at JGI
… one constant for the Joint Genome Institute. On July 1, 2020, that all changed. Ray’s vigilant stewardship as JGI’s … at 2800 Mitchell Drive, which was dedicated in February 2008. Ray won the  Director’s Award for Operations in 2017 in recognition of his tireless efforts to ensure the JGI’s …
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Evolution of a Fungal Gene Expression Regulator
… of life, they tracked the evolution of 5mC pathways across 528 species. The researchers found that unlike most flowering … of the US Department of Energy under contract no. DE-AC02-05CH11231. The Georgia Advanced Computing Resource Center (GACRC) …
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Tracking the Origins of Methane-Producing Microbes
… three pathways for methanogenesis: hydrogen-dependent and CO2-reducing, or hydrogenotrophic (most common); … complete set of genes needed for hydrogen-dependent and CO2-reducing methanogenesis.  These two things combined led us …
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Here, There and Everywhere: Large and Giant Viruses Abound Globally
… out and characterize uncultivated viruses. For instance, a 2018 study from a JGI-led team uncovered giant viruses in … as a barcode to sift out virus fragments, reconstructing 2,074 genomes of large and giant viruses. More than 50,000 …
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Training the Next Generation of Talent
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JGI Accepts 17 Proposals for Community Science Program
… and how ecosystems are adapting to stresses. A total of 17 proposals have been approved through the annual Community …
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Webinar: PhycoCosm Tutorial
… to be changed, please contact us and we’ll work work it out 2.  Q(uestion): Do you publish the data sets the trees are … be on the genomes portal? For the taxa I work on, there are 7 genomes on NCBI but your portal has only 2 of them. A: … in the dropdown of available targets on the synteny page. 7.  Q: What is the success rate for CSP? What makes a …
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Team Science Reveals Important Protein in Poplar
… nutrient-poor land, drought and disease.  Summary In the 1970s, the DOE  targeted poplar as its primary wood crop for … (BNL). The Fe deprivation RNA-seq (proposal:  10.46936/10.25585/60001386 ) was conducted by the U.S. Department of Energy Joint Genome Institute ( https://ror.org/04xm1d337 ), a DOE Office of Science User Facility, and is supported …
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How Filamentous Fungi Sense Food
… the use of deletion strains generated by Grant P01 GM-068087 “Functional Analysis of a Model Filamentous Fungus” and … Laboratory under US Department of Energy Contract DE-AC02-05CH11231, a Joint Genome Institute Community Science …
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