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An Automated Tool for Assessing Virus Data Quality
… scientist Stephen Nayfach, the study’s first author in the Microbiome Data Science group led by Nikos Kyrpides. To … database that is part of the Integrated Microbial Genomes & Microbiomes (IMG/M) suite, as well as sequences from the …
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JGI Contributes Nine to 2022 Highly Cited Researchers List
… article detailing how forest floors, in particular the soil microbiome, recover post-wildfire . He and  Tringe were also … applied metagenomic capabilities to  studying phytoplankton microbiomes  from polar and non-polar oceans.   The reasons …
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Game On: High School Students Drive Everglades Metagenomics Study
… training for the JGI’s Integrated Microbial Genomes & Microbiomes (IMG/M) portal for their sample analysis.  The … write a scientific paper. They wrote, edited, and rewrote a microbiome announcement that has been submitted to the journal  Environmental Microbiome with significant scientific observations for this …
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JGI Launches Latest Strategic Plan
… JGI supports, include JGI’s emerging leadership role in a Microbiome Data Science effort (pages 37-39) and the …
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Graduate Students Get Thesis Research Opportunity at the JGI
… and the interactions of plants with their associated microbiomes. Tringe was also Kaze’s mentor during her 2018 … in which she explored anthropogenic impacts on wetland microbiome composition and metabolism, work on which she …
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Mining Metagenomes for Cas Proteins
… mining the datasets in the Integrated Microbial Genomes and Microbiomes (IMG/M) suite of tools managed by the U.S. … JGI data scientist David Paez-Espino in Nikos Kyrpides’ Microbiome Data Science group mined the IMG/M system with …
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… Ivanova, senior author of the study and head of the JGI’s Microbiome Annotation Group. Many of these bacterial and … are available on the JGI’s Integrated Microbial Genomes & Microbiomes ( IMG/M ) portal. As part of a comparative …
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VEGA Symposium
… of virus-host interactions and phage-based technologies for microbiome manipulation, the VEGA symposium represents a …
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Effects of Polar Light Cycle on Microbial Food Web
… for metagenomic sequencing. A study  recently published in  Microbiome shows that the way nutrients flow through the …
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Supercharging SIP in the Fungal Hyphosphere
… with results published in the  November 2022 issue of Microbiome . High-throughput stable isotope probing (SIP) …
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How to Target a Microbial Needle within a Community Haystack
… be sequenced. Their protocol,  detailed in the journal  Microbiome , combines multiple techniques and was …
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Interdisciplinary delegation from the University of Duisburg-Essen explores collaborative opportunities with Lawrence Berkeley National Laboratory
… are excited to continue our fruitful collaboration in the microbiome space that has resulted in many impactful papers …
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