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Katherine Louie
Dr. Louie joined the JGI in 2014 to develop the metabolomics program, and in 2019 … manages metabolomics production for community sequencing projects and heads R&D efforts to expand the metabolomics … M, Kuftin AN, et al. Mass Spectrometry for Natural Product Discovery. 2020.  Reference Module in Chemistry, Molecular …
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Nick Everson
Mr. Everson rejoined the JGI in 2020  and leads all aspects of JGI Operations which include the Safety, Finance, Human … Haas School of Business Served as a reviewer for DOE’s Science & Operations Peer Review of the Center for …
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JGI-Enabled Research Demonstrates the Existence of New Methane-Makers
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … (FICUS) with the Environmental Molecular Sciences Lab (EMSL), another DOE user facility located at Pacific … and, if so, to what extent.  “These new groups were discovered not by cultivation, like the original methanogens …
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Accelerating Metagenomics Discoveries with Deep Learning
… the US Department of Energy (DOE) Joint Genome Institute (JGI), presented on generating vector representations of … is part of the JGI Genome R&D Group and is one of more than 100 scientists and systems engineers involved in … of Energy Joint Genome Institute, a DOE Office of Science User Facility  located at Lawrence Berkeley National …
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Applying Viral Genomics Expertise to Understanding the Human Virome
JGI researchers lend expertise to develop tools and data hub … Laboratory, have collaborated with global researchers on projects related to understanding how the interactions … specific database of IMG/VR (Viral Resources.) Launched in 2016, IMG/VR is the largest publicly available collection of …
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Picking Up Threads of Cotton Genomics
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … for all this new cotton work, and even the original cotton project was to try to bring in molecular methods of breeding …
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A Step Toward Controlling Soybean Rust
… as 90 percent. As part of the DOE Joint Genome Institute’s  2016 Community Science Program portfolio , Sebastien Duplessis of the … to counter soybean rust disease. Soybean itself is a  JGI Flagship plant genome , and JGI  published its genome …
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Rex Malmstrom
… of the Microscale Applications group. Before joining the JGI in 2010, he made the first ever measurements of in situ … also carries out custom preparative work for difficult user projects, including those that require fluorescence … viruses. Nature Comm . 9 (1), 4881 Tsementzi, D. et al. 2016. SAR11 bacteria linked to ocean anoxia and nitrogen …
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Game On: High School Students Drive Everglades Metagenomics Study
In late June, Kathleen Lail, a member of JGI’s Sample Management Group, attended a conference in Florida to discuss a JGI pilot project involving soil sampling in the Florida Everglades to … out from the enormous data set on the IMG portal. The class discovered Actinobacteria, Acidobacteria, and Proteobacteria …
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Finding the Fermenters
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … Environmental Research (BER) program to enable scientific discovery in support of the DOE mission. Fermentative … than 400 cultured rumen prokaryotes from the  Hungate1000 project . They also used the tool to predict possible …
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The Chlamydomonas Genome Project, version 6: reference assemblies for mating type plus and minus strains reveal extensive structural mutation in the laboratory.
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Sequencing Sphagnum Leads to Discovery of Sex Chromosomes
… of peat moss drives insight into carbon storage   The Science Boggy peatlands, which hold much of the Earth’s … to better understand how sphagnum adapts to these varying topographies which could ultimately help preserve peat bogs … of Energy Joint Genome Institute, a DOE Office of Science User Facility at Lawrence Berkeley National …
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