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Kjiersten Fagnan
… Kjiersten Fagnan began working with JGI in 2012 as a NERSC bioinformatics computing consultant, … closely with staff to understand the data-intensive nature of JGI workloads. Dr. Fagnan was appointed CIO of the JGI in 2016, and in 2018 was hired to be the JGI’s …
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An Automated Tool for Assessing Virus Data Quality
… (metagenomes). However, the quality and completeness of metagenome-assembled virus sequences vary widely. In a … uncultivated viruses. Following up on those guidelines, JGI researchers have now developed CheckV (pronounced … applied to over 2.4 million viral genomes available in the latest release of IMG/VR . CheckV is freely available for …
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Researching and Solving Real-World Problems with the 2023 JGI-UC Merced Interns
… students this past summer. This year’s cohort for the JGI-UC Merced Internship Program was brimming with … Emerald Nash and mentor Jonelle Basso, Experimental Study of Root Colonization by Resident Phages of a Plant Growth … Andrew Lin : My mentor is Vy Duong, and we’re working together on predicting the level of photosynthesis in a model …
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Programs & Platform Leads
… As an Integrative Genome Science User Facility, the JGI plays a leadership role in providing genome science capabilities to support BER's mission of achieving a predictive understanding of complex biological, earth, and environmental systems for …
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Training the Next Generation of Talent
… New Graduate Internship Program Builds Bridges Between DOE JGI, UC Merced Days after presenting the results of his summer research at the U.S. Department of Energy … lab, he also took a long view of the opportunity. “I’m getting a picture of the amount of data that’s going to be …
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Partners
… The JGI leverages its existing partnerships and develops others … advance the science and serve as impact multipliers . The JGI has a long-term partnership with the HudsonAlpha … our Plant Program, and is further leveraging the services of the Arizona Genomics Institute for DNA and RNA …
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SPRUCE-ing Up Science
… A former JGI intern is now applying his internship lessons on … his backyard in Tennessee — the birds are chirping and a soft breeze ripples through the trees in his backyard. … with program co-founder and JGI mentor, Zhong Wang. Together, they worked to develop a tool that leveraged machine …
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Genome Insider
… Insider podcast brings listeners into the science that the JGI makes possible. Each episode, host Menaka Wilhelm interviews researchers — JGI Users — and dives into their work on all kinds of organisms, from plants and fungi to microbes and viruses. …
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Metabolomics
…   Metabolomics strengthens -omics technologies at the JGI by identifying the actual molecules present in an … functional genome annotation, improves understanding of the role small molecules play in diverse biological … sheds light on nutrient cycling, and leads to the discovery of new molecules and pathways. The JGI Metabolomics Platform …
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User Executive Committee
… The UEC represents the JGI user community and is responsible for providing input and advice on JGI policies and practices that affect users and their science including technical capabilities offered, proposal review procedures and the annual user …
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A Revamped Amplification Method that Enables Nearly Complete Single-Cell Genomes
… With a new methodology, scientists are now getting more complete genomic results from single cells. The Science Studying the  genomes of microorganisms is incredibly useful for understanding the … The U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Project Management Office
… The JGI Project Management Office carries out a number of activities to facilitate world-class science. PMO works with users, JGI scientists and technical staff to onboard users and … Please review our FAQ in advance of contacting the PMO office.  … start on any approved proposal – including the submission of samples for sequencing, or the submission of sequencing …
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