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River microbiomes from around the world: Kelly Wrighton
Kelly Wrighton and her group at Colorado State University in Fort … world’s river microbiomes. And they’re using team science to do it.   …
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IMG/VR
JGI's Simon Roux describes the structure and content of the … the latest release of IMG database dedicated to viral genomes assembled from metagenomes. He also demonstrates briefly how to …
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Krishna Palaniappan
… design and maintenance of the Integrated Microbial Genomes (IMG) data warehouse, and integration of genomic and metagenomic data with transcriptomics and proteomics data. …
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Improved-high-quality draft genome sequence of Rhodococcus sp. JG-3, a eurypsychrophilic Actinobacteria from Antarctic Dry Valley permafrost
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Identifying the Microbial Cleanup Crew at a Superfund Site
… site. The chemical PCE (perchloroethylene) found its way into the groundwater of several communities in New Mexico via leakage from a local dry-cleaner. Researchers  identified two … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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NeLLi — Symposium on New Lineages of Life
… hosted the hybrid “NeLLi 2023 Symposium” delving into the most recent expansions of the Tree of Life and latest … other technological advancements that facilitate the shift from uncovering microbial novelties to deciphering metabolic … Hatzenpichler, Montana State University Maggie Sogin, UC Merced   …
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Genome sequence of Burkholderia mimosarum strain LMG 23256T, a Mimosa pigra microsymbiont from Anso, Taiwan
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From Textbook to Real World Applications
… students Maya Hanck of Carondelet High School and Tim Kostolansky of De La Salle High School expressed an interest in … Evans and Jan-Fang Cheng in the Functional Genomics group took it upon themselves to mentor them. …
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Trent Northen
Dr. Northen is currently a Senior Staff Scientist at Berkeley Lab. Since joining Berkeley Lab in … the ENIGMA SFA project. In 2015, he founded what is now the JGI Metabolomics Program to provide advanced metabolomic methods available to JGI …
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A Mentor’s Perspective on Training the Next Generation
Over the years, hundreds of interns have come to the JGI from all parts of the globe to gain lab …
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Neha Varghese
Neha’s key role is to design, benchmark, and apply bioinformatics software to … and interpretation of genomic and metagenomic data for JGI’s user community. She also provides support for user … and implementation of microservices in conjunction with the IMG platform. …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… by AI and Machine Learning — JGI researchers and collaborators work to create FAIR datasets to maximize returns on … by weeks of tricky, laborious lab work to analyze samples from one experiment. Starting a  few years ago, researchers … analyses that they will all compare. Thanks to robust internal analytical standards, the JGI is well-positioned to …
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