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… To provide broad plant genomic capabilities, the DOE Joint … – the complete set of RNA molecules transcribed from all the genes within a cell or tissue at a specific … team contributed additional sample sets, such as sorghum internode time course data from 4 different genotypes by Dr. …

… team has optimized a crucial part of CRISPR-Cas9 technology to enable improvements in microbial oil production. The … Department of Energy’s goal of producing sustainable fuels from alternative sources. Moreover, the team says the … spend the first four sharpening the axe.” In this study,  published in  Metabolic Engineering , a team of researchers …

… Miscanthus  sequence offers insights into benefits of polyploidy and perenniality. The Science A … genomic tools, allows Miscanthus to both inform and benefit from breeding programs of related candidate bioenergy … was recently published in Nature Communications by an international, multi-institutional team. The work was a …

… fungal genomes, omics data and comparative analysis tools. Questions and Answers 1.  Q(uestion): Do you accept … in metagenomes? A: Search in metagenomes is available from another JGI portal, IMG:  https://img.jgi.doe.gov 7.  … these externally sequenced genomes more comparable with our internal ones which are filtered by default. In the process …

… alga – Chlamydomonas reinhardtii – that’s managed to have a big impact. UC Berkeley plant biologist Sabeeha Merchant explains why … – like plants. [ Editor’s Note: Merchant is also a faculty scientist in the Environmental Genomics & Systems Biology …

… The Genome Insider podcast brings listeners into the science that the JGI makes possible. Each episode, host Menaka Wilhelm … — and dives into their work on all kinds of organisms, from plants and fungi to microbes and viruses. Listen in to …

… and more virus sequences are being recovered and identified from environmental samples (metagenomes). However, the … virus sequences vary widely. In a previous effort, an international consortium recommended specific guidelines and … have now developed CheckV (pronounced “Check-Vee”) to help researchers assess and improve the quality of …

… Do metabolic pathways from engineered yeasts still work in cell-free environments? (Spoiler: Yes.) Think of cells as tiny factories: within their walls they have both the machinery to … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …

… of environments, including plants, soil, and the gut. To better understand the dynamics of this molecule, … animals and plants, or cause metal corrosion in oil pipes. Scientists have tried to study cyclic di-GMP and cellular … changes in cyclic di-GMP via live cell imaging. Summary From digestive tracts to plant surfaces and soil, bacteria …

… Do metabolic pathways from engineered yeasts still work in cell-free environments? … engineered for the biochemical conversion of glucose to value-added products are limited in chemical output due … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …

… The JGI Project Management Office carries out a number of activities to facilitate world-class science. PMO works with users, JGI scientists and technical staff to onboard users and guide …

… Kjiersten Fagnan began working with JGI in 2012 as a NERSC bioinformatics computing consultant, after completing a petascale postdoctoral fellowship at NERSC and LBNL’s Computational Research … Microbiome Data Collaborative where she leads infrastructure and user-centered design efforts. Dr. Fagnan was on …