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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… to analyze samples from one experiment. Starting a  few years ago, researchers can request quantitative SIP analysis … and Reusability) for data reuse.  In the last year, JGI’s user community has helped propel multiple … of his lab, Abigayle Simpson. They found that although 20 years of SIP experiments have generated plenty of insights, …
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Notes on the Microbial Diversity of Puerto Nuevo’s Coastline
… “Being a JGI-UC Merced Intern during the summer of my first year as a Ph.D. student significantly, and positively, …
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Applying Viral Genomics Expertise to Understanding the Human Virome
… the microbes by at least another order of magnitude. For years, scientists at the DOE Joint Genome Institute, a DOE … to easily analyze viral genomes. This includes (i) classifying viruses into groups that can be compared across … viral genomes ( Nature Biotechnology , 2021), geNomad , a tool for identifying mobile genetic …
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Jeremy Schmutz
… simple yeasts to large vertebrate genomes.  For the past 13 years, Mr. Schmutz has directed the JGI Plant Program, … kingdom. Nucleic Acids Res . 51, 1–24.Lovell, JT et al. 2021. Genomic mechanisms of climate adaptation in polyploid … agronomically valuable loci. Nature Biotechnology 38:1203-1210. Chen, ZJ et al. 2020. Genomic diversifications of five …
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Dispatches From JGI Interns
JGI mentors. In this episode, hear two interns from the 2021 cohort describe their deep dives into genomics, …
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
… biofuel feedstocks with less fertilizer. For millions of years, underground fungi have lived in symbiosis with plant … led the work in collaboration with JBEI as part of the 2021 Laboratory Directed Research and Development (LDRD) … a DOE  Early Career Research Program (ECRP) award in 2021, which aims in part to build off of this work. Former JGI …
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The JGI Data Portal: Improving User Experience
… of focus and data and computational needs. Over its 23-year history, JGI has produced more than 13 petabytes of …
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
… biofuel feedstocks with less fertilizer. For millions of years, underground fungi have lived in symbiosis with plant … led the work in collaboration with JBEI as part of the 2021 Laboratory Directed Research and Development (LDRD) … a DOE  Early Career Research Program (ECRP) award in 2021, which aims in part to build off of this work. Former JGI …
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JGI Earth Month: The Unusual Metabolism That Helps Plants Withstand Drought
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JGI at the AGU Fall Meeting
This year the AGU Fall Meeting, with the theme “Science is …
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Training the Next Generation of Talent
… of California, Merced to start orientation as a first-year graduate student in the Quantitative Systems Biology … I’ll take that knowledge back with me.” Now a second-year evolutionary biology student in David Ardell’s lab, he … that’s going to be generated at academic level in a few years as it’s getting closer to producing trillion base data …
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Kjiersten Fagnan
Computing Conference . … UC CORO participant, 2021 Member of the Networking and Information Technology …
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