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Katherine Louie
… analysis pipelines.  Beyond profiling over 10k samples/year, Dr. Louie and her team work with other JGI scientists … to assess metabolite turnover, DNA-SIP for helping identify active micro-organisms within complex communities, and … AN, et al. Mass Spectrometry for Natural Product Discovery. 2020.  Reference Module in Chemistry, Molecular Sciences and …
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Model Fern Reveals Insight into DNA Thievery in Ferns
… a genome duplication event that occured some 60 million years ago. Massive gene loss, rampant gene duplications, and … high-quality genome assemblies and annotations for 35 species representing all major evolutionary lineages in … for 85.2% of the C-fern assembly. While they did identify a couple WGD events, these events could not fully account …
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Eelgrass Proves to Be Much Younger Than We Thought
Recent study shows eelgrass has been around about 2.5 million years less than previously believed.  The Science Eelgrass, … that eelgrass began colonizing the oceans  about 3 million years ago. The study shows that figure is likely closer to a …
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JGI@25: The Little Alga That Could
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of … is interesting because in humans (where it’s called RECQL5), the loss of this protein is associated with cancers. …
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JGI Hosts GPU Hackathon in May
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Kjiersten Fagnan
… enabling microbiome science. Nat Rev Microbiol 18, 313–314 (2020). https://doi.org/10.1038/s41579-020-0377-0 S. Pau and J.B. Bell and A.S. Almgren and …
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MycoCosm Tutorial
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Marine Microbe Contains Multitudes
… to the continuous pressure of the dark abyss, 4000 m (2.5 miles) deep. Scientists have wondered, how can SAR324 … cruises in 2015 and 2016. At Station ALOHA , site of the 30-years-long Hawaii Ocean Time-series (HOT), they collected … namely the 16S ribosomal RNA (rRNA) gene, to mark or identify microbial species. All SAR324 have very closely related …
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JGI@25: Strengthening Soybean
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of … completed by the JGI. It has since been cited more than 5,400 times, including a number of projects that point to … due to the sequence’s availability via Phytozome. In 2015,  a new and revised version brought the soybean sequence …
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Streamlining Regulon Identification in Bacteria
… assay with RNA sequencing, they were able to identify the target genes of 11 sigma factors in Streptomyces … and cellular differentiation. The tough part is identifying the set of genes associated with any particular … of whole transcriptomes, and the third is determining the 5’-ends by 5’-end sequencing, from which those promoter …
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Tina Clarke
… relations matters and coaching supervisors and managers. Years later she received her MA degree in Counseling from … June 2017 –  present Sr. Compensation Analyst, May 2015 –  present Joint Genome Institute (JGI) HR Partner, June … Berkeley, CA, Sr. HR Division Partner 2007 – May, 2015 Sybase (SAP Acquired Company), Dublin, CA, HR Manager 2000 …
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When “The Blob” Made It Hotter Under the Water
United States began forming in Alaska. Over the next two years it slowly spread, raising water temperatures by a few … of the U.S. Department of Energy under Contract DE-AC02- 05CH11231, the G. Unger Vetlesen and Ambrose Monell …
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