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JGI@25: The Human Genome Project, or the JGI’s Origin Story
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable … to human health. Three DOE national labs had people and resources focused on three human chromosomes: Lawrence … the sequences of these three chromosomes. These sequences account for approximately 12% of the total human genome, …
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Fields of Breeders’ Dreams: A Team Effort Toward Targeted Crop Improvements
As  reported January 27, 2021 in  Nature , the team led by researchers at the University of Texas (UT) at Austin, … adaptability to various environmental conditions. “To accelerate breeding for  bioenergy , we need to make … technologies have allowed us to build the necessary genome resources to directly test for genes involved in biomass …
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Data Ecosystem
To expand access to integrated data, improve tools and infrastructure … and KBase are designated DOE Office of Science Public Reusable Research (PuRe) Data Resources are authoritative providers of data or …
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Applying Viral Genomics Expertise to Understanding the Human Virome
… the stars in the Milky Way, viruses outnumber the microbes by at least another order of magnitude. For years, … expertise in developing and managing public viral genomics resources such as analytical tools and data repositories to … Consortium Organization and Data Collaboration Center (CODCC), is led by a team of highly experienced investigators …
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Jane Grimwood Named HudsonAlpha Genomics Chair
… was a group lead at Stanford Human Genome Center directed by Richard Myers, and among the Center staff that moved to … sequence of the complex switchgrass genome , using samples from common gardens growing across the country. The … in wild populations for the first time. A 2020 Nature Genetics paper describing the genomes of the five major …
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Tanja Woyke
Highly Cited Researcher, Biology and Biochemistry, top 1%, by Clarivate Analytics 2020 van Niel International Prize for … Nature Communications, Nature Protocols, Nature Reviews Genetics, ISME J, Nucleic Acids Research, DOE Small Business … at Caltech Review (Member of Visiting Committee), NASA Exobiology.  … Volland et al. 2022. A centimeter-long …
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Climate Change Threatens Base of Polar Oceans’ Bountiful Food Webs
… warmer waters, including the tropics, tend to be dominated by prokaryotes (microorganisms without a defined nucleus). … because of eukaryotic phytoplankton — not prokaryotes,” said Thomas Mock, marine microbiologist at the University of … the juicy proteins and lipids that eukaryotes are.” But according to a new study published September 16, 2021 in …
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Finding the Fermenters
Harnessing BER-funded data resources, researchers built an interactive and … community brings together the data resources enabled by the DOE Biological and Environmental Research (BER) … in support of the DOE mission. Fermentative metabolism occurs in environments such as ruminant guts, sediments, and …
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JGI-KBase Panel at SACNAS
Nov. 2: Getting Credit for Scientific Contributions of Any Size … Lastly, students will learn how they can start using these resources to track their contributions to their benefit. …
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Understanding Wildfire Recovery, Starting in Soil
… at microbial genomes across a spectrum of burned soils. By connecting microbial genes with functions useful for … a multi-institutional team of researchers collected soil samples from a wildfire that burned at the Colorado-Wyoming … Collaborations for User Science (FICUS) initiative and used resources at the Environmental Molecular Sciences Laboratory …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… — especially with the prospect of meta-analyses boosted by AI and Machine Learning — JGI researchers and … Even better, creating comparable data with useful and accessible metadata multiplies these possibilities, and … MetaSIPSim … Microbes Persist SFA on KBase … Additional Resources …
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Designer DNA: JGI Helps Users Blaze New Biosynthetic Pathways
… issue of Synthetic Biology celebrates research enabled by the JGI DNA Synthesis Science Program. Fashioning DNA … challenges. But not all scientists have the expertise and resources to do DNA design and synthesis work. This is where … research projects in our group. It’s enabled us to accelerate gene, enzymes, and pathway discovery approaches …
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