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JGI@25: Roots of a Mutualist Relationship
… energy and environmental challenges. In March 2008, the genome sequence of the forest fungus Laccaria bicolor was … a symbiotic relationship with the poplar, a JGI Flagship Genome and the first tree to have its genome sequenced. Having this first genome sequence of a …
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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… nearly tripled the available fungal mitochondrial genome data, unlocking new potential for AI-driven studies … nearly 10,000 new annotations of fungal mitochondrial genomes — the DNA found inside mitochondria, the … genes have moved from the mitochondria into the nuclear genome over evolutionary time. They also discovered more …
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JGI@25: The Human Genome Project, or the JGI’s Origin Story
… help solve energy and environmental challenges.   The Human Genome Project began in 1990 when the U.S. Department of … studying Chromosome 5, which contains about 6% of the human genome . They discovered genes linked to conditions such as … Chromosome 19, which contains about 2% of the human genome. They were interested in genes involved in repair of …
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JGI@25: Using Team Science to Build Communities Around Data
… (Graphic: Neil Byers) The JGI launched the 1000 Fungal Genomes (1KFG) Project through a 2012 Community Science … State University led the effort to sequence 1000 fungal genomes to create two reference genomes for all fungi families — essentially, the foundation …
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Complete Genome of Oil-Rich Alga Reveals Ideal Platform for Bioengineering
… Streamlined genome with precise gene targeting transforms oil-producing … products.    The Science Scientists have fully decoded the genome of an oil-producing green alga, and demonstrated precise gene targeting in the genome in the November 2025 issue of The Plant Cell. …
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Webinar: MycoCosm Tutorial
… data portal , an interactive collection of sequenced fungal genomes, omics data and comparative analysis tools. … A(nswer): Our focus is on fungi, algae, plants, and the microbial world but we also annotated several Phytophthora … resources for plants (phytozome), algae (PhycoCosm), and microbial world (IMG) 29.  Q: Does MycoCosm support diploid …
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For the Tiniest Archaea, A Genomic Switch of Friend or Foe
… are abundant and yet exceptionally small, with mini genomes to match. As a result, they cannot process all of … microorganisms had a close relationship. Then, using metagenomes and metatranscriptomes generated by the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User …
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A Collaboration to Improve Plant Genome Annotations Across Species
… To provide broad plant genomic capabilities, the DOE Joint Genome Institute works in partnership with the HudsonAlpha … Institute for Biotechnology, which specializes in genome improvement for plants. As part of that partnership, … diverse plant species. It was developed to improve plant genome annotations at the US Department of Energy (DOE) …
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DRAM for distilling microbial metabolism to automate the curation of microbiome function
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Microbial Ecology on Solar Panels in Berkeley, CA, United States
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Anoxic carbon flux in photosynthetic microbial mats as revealed by metatranscriptomics
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Validation of two ribosomal RNA removal methods for microbial metatranscriptomics
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