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FOAM (Functional Ontology Assignments for Metagenomes): a Hidden Markov Model (HMM) database with environmental focus
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Plotting a Model for Virus-Host Warfare Deep Below Ground
… (metagenomics) and a chemical labelling approach. The Impact Altiarchaea are abundant and dominant populations in … and included researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National …
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Busting the Unbreakable Lignin
… — are actually capable of naturally modifying lignin.  The Impact Traditional methods for breaking down biomass use … at the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility at Lawrence Berkeley National Laboratory, and …
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From Stress to Growth: The adaptive mechanisms of algae in changing Arctic waters
… and sequencing from the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … using Digital Research Alliance of Canada-Compute Canada facilities. The work (10.46936/10.25585/60001017) conducted …
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Dealing with Drought: Uncovering Sorghum’s Secrets
U.S. Department of Energy Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab). The Impact Half a billion people consider sorghum a staple food …
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Disclaimer
… by trade name, trademark, manufacturer, or otherwise, does not necessarily constitute or imply its endorsement, … U.S. Department of Energy under Contract No. DE-AC02-05CH11231. Accordingly, the U.S. Government retains a …
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Accelerating Metagenomics Discoveries with Deep Learning
… a computational biologist at the US Department of Energy (DOE) Joint Genome Institute (JGI), presented on generating … the JGI. Sevim’s work is part of an ongoing effort to build greater collaboration between JGI and scientists in the … of Energy Joint Genome Institute, a DOE Office of Science User Facility  located at Lawrence Berkeley National …
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Supercharging SIP in the Fungal Hyphosphere
… novel interactions between bacteria and the fungi. The Impact Stable isotope probing is a long and laborious … and the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility at Lawrence Berkeley National Laboratory, have …
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Better Genome Editing for Bioenergy
… 94 percent of the genes in a lipid-prolific yeast. The Impact The team used this set of guide RNAs on  Yarrowia … felling their research problem: at a genetic level, how does  Y. lipolytica work? The project was a … Joint Genome Institute (JGI), a DOE Office of Science User Facility. Y. lipolytica is a tantalizing microbial …
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Effects of Polar Light Cycle on Microbial Food Web
… clues into a unique environment in the natural world. The Impact From the polar regions to the deep ocean, cold … long ago, this shift to archaea being the main producer doesn’t occur here. Understanding this fundamental … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National …
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Ancient Algae Reveal Secrets of Plant Evolution
… framework to thrive outside aquatic environments. The Impact A deeper understanding of how plants adapted to … Community Science Program of the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National …
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Katherine Louie
… the metabolomics capabilities and product offerings for JGI users.  Using cutting-edge mass spectrometry-based … BP, Sundaresan V, Northen TR, et al. Bioactive diterpenoids impact the composition of the root-associated microbiome in maize (Zea mays). Scientific Reports. 2021. doi:10.1038/s41598-020-79320-z 3. …
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