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Nontargeted virus sequence discovery pipeline and virus clustering for metagenomic data
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Combining Hadoop with MPI to Solve Metagenomics Problems that are both Data- and Compute-intensive
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Searching for fat tails in CRISPR-Cas systems: Data analysis and mathematical modeling
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GNPS Dashboard: collaborative exploration of mass spectrometry data in the web browser
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Best practices for the execution, analysis, and data storage of plant single-cell/nucleus transcriptomics
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Katherine Louie
… the metabolomics capabilities and product offerings for JGI users.  Using cutting-edge mass spectrometry-based … nonpolar metabolite analysis, creation of large metabolite databases by running 1000s of metabolite standards, and … micro-organisms within complex communities, and custom software for integrating metabolomics with genomic data …
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Examples: Successful LOIs & Submissions
… Genomics, and Facilities Integrating Collaborations for User Science calls. These documents have been shared with …
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DOE Metrics
… hours.   FY 2025 DOE Metrics There were 2,627 unique* JGI users in FY2025 , which includes Principal Investigators … capabilities to analyze complex genomic or metagenomic datasets. [Download PDF] Q3 – Report on new computational approaches for the annotation of genomic data. [Download PDF] Q4 – Report on a new computational …
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JGI announces second round of 2023 New Investigator awardees
… Felipe Valdez-Nuñez  The JGI is eager to work and share our tools with a widening circle of researchers. That’s why …
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SoyCSN: Soybean context‐specific network analysis and prediction based on tissue‐specific transcriptome data
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The Physcomitrella patens gene atlas project: large‐scale RNA‐seq based expression data
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Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data
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