Search

… with excitement and determination as they came onsite. From data carpentry to science communications, their schedules … and their JGI mentors are listed below, along with their project focus areas: Undergraduate Interns Andrew Lin and … and mentor Bryce Foster, Benchmarking Bioinformatics Tools for Sequence Similarity Searching Morgan Lavenstein …

… analysis of microbial, fungal, and plant research projects.  More recently, these long-reads have been applied … sequenced without pooling, which yields ~ 180 Gb of data per library. Q: How much DNA/coverage is required for … Methylation detection currently only works using subread data, PacBio is working on support to use CCS data as input. …

… and graduate students to engage in real, impactful research projects with JGI mentors. In this episode, hear two interns … describe their deep dives into genomics, computational tools, and big data.  …

… of an integrated platform for tracking JGI's sequencing projects and data warehousing. This platform streamlines project … Management Systems (LIMS), bioinformatics, and genomics data management. He has worked at several renowned …

… a vast range of organisms and ecosystems. These kinds of data could open opportunities along multiple avenues, … community with advanced genomic capabilities, large scale data, and professional expertise while responsibly managing … expect to offer our user community an exciting range of new tools and capabilities to support their scientific …

… months, the students participated in networking workshops, data carpentry hackathons, and also made new friends while working on their summer projects. Watch the short video here to see what they had to … ” Anna Kucherova : “I got to learn about skills and tools that I’d never done before from my mentors. Also, …

… CLOSED Who Should Apply? Investigators with research projects that integrate the expertise and capabilities of … user facilities Investigators with DOE mission-relevant projects that call for expansive sequencing, synthetic …

… research focuses on leveraging thousands of metagenomic datasets from host-associated and environmental samples to … She also leads the DOE’s multi-lab National Microbiome Data Collaborative (NMDC). Prospective users with questions … Wood-Charlson EM, et al. 2020. The National Microbiome Data Collaborative: enabling microbiome science. Rev. …

… attended a conference in Florida to discuss a JGI pilot project involving soil sampling in the Florida Everglades to … through over 55 billion genes and 16 trillion DNA bases of data, to figure out what to study and compare for the … tests for raw data and how to use some bioinformatics tools for analysis to help them focus on what to pull out …

… the primary author on this publication and drove the entire project, Visel explained. She continued working virtually … ecosystem,” said Salamov, one of Wint’s mentors and a data scientist at the JGI. Previous studies were conducted … predictor of gene expression levels using machine learning tools. “This was very exciting to see how Rhondene not only …

… Jeremy Schmutz Susannah Tringe Tanja Woyke Below are a few projects each of these researchers were involved in, … multi-institutional research team that combined field data with a reference switchgrass genome to associate … Engagement Webinars promoting the JGI fungal data portal MycoCosm and the algal portal PhycoCosm. Additionally, …