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Triggering Morel Fruiting
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility,  reported on … acquired from an external source.  The work is part of the JGI’s 1000 Fungal Genomes Project, which aims to provide … for every family of fungi. In the following guest piece, JGI user Dr. Tan details the results of the team’s work. …
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Expanding Virophage Diversity
… the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science facility, have increased the … more than 14,000 publicly available metagenomic datasets in JGI’s  Integrated Microbial Genomes & Microbiomes (IMG/M) … and environmental characterization and cleanup. The JGI provides integrated high-throughput sequencing and …
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Improving the Cacao Genome and Phytozome
… for comparative purposes on the latest version of the JGI plant portal Phytozome at  phytozome-next.JGI.doe.gov . One of the goals in updating the genome … and environmental characterization and cleanup. The JGI provides integrated high-throughput sequencing and …
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A More Intuitive Phytozome Interface
… Highlighting the latest interactive version of the JGI’s plant data portal. On August 6, 2021,  version 12 of … August 6th? All URLs with a domain of  https://phytozome.jgi.doe.gov will be forwarded ( where possible ) to their corresponding pages at  https://phytozome-next.jgi.doe.gov . If a genome from v12 is present in v13, the …
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Climate Change Threatens Base of Polar Oceans’ Bountiful Food Webs
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … their RNA transcripts. All sequencing was done through the JGI Community Science Program . Using an ecology metric … properties,” said study coauthor Igor Grigoriev , JGI Fungal & Algal Program Head. “But still, there are no …
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DAP-seq Drives Robust Mapping of Gene Regulation
… Implementation Lead at the DOE Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … author on the paper and computational biologist at the JGI. “We had to work really hard to make them work for the … beyond plants. Currently, this technology is available to JGI users for studies on organisms with smaller genomes, …
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Learning to Look
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, developed an … viruses,” said the study’s lead author Simon Roux, a JGI research scientist in the  Environmental Genomics group … and environmental characterization and cleanup. The JGI provides integrated high-throughput sequencing and …
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Doubling Down on Known Protein Families
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … proteins with massively parallel computations.”  Guided by JGI scientists, the team embarked on a mission to unveil the … Nikos Kyrpides , senior author of the study and head of the JGI’s  Microbiome Data Science group . Shining a Light on …
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Cold adaptive traits revealed by comparative genomic analysis of the eurypsychrophile Rhodococcus sp. JG3 isolated from high elevation McMurdo Dry Valley permafrost, Antarctica
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Meeting Code of Conduct
… All participants and staff of JGI events are required to adhere to the following Code of …
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What Happens Underground Influences Global Nutrient Cycles
… DOE user facilities EMSL and JGI announce FY 2020 collaborative FICUS projects. Through … Laboratory (EMSL) and the  DOE Joint Genome Institute (JGI)—have selected 11 proposals for support from 53 received … studies the alga  Chlamydomonas reinhardtii , one of the JGI’s Flagship genomes. She and her colleagues have …
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Notes on the Microbial Diversity of Puerto Nuevo’s Coastline
… Merced graduate student Sabah Ul-Hasan and alumnus of the JGI-UC Merced Genomics Internship Program, first sampled the … Associated Microbes and Parasites. Ul-Hasan credits her JGI-UC Merced summer internship for helping lay the foundation for her graduate work. “Being a JGI-UC Merced Intern during the summer of my first year as a …
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