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Boosting Small Molecule Production in Super “Soup”
… Do metabolic pathways from engineered yeasts still work in cell-free … Yeast strains engineered for the biochemical conversion of glucose to value-added products are limited in chemical … Nature Communications , researchers led by Hal Alper at The University of Texas at Austin and Michael Jewett of …
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Engagement Webinar: Accessing NEON’s Environmental Sample Archives, Applying JGI & EMSL Omics Tools
… The  National Ecological Observatory Network (NEON) is a network of field research sites designed to collect long-term open … includes access to the NEON Biorepository at Arizona State University, which archives and makes available for research … Department of Energy Joint Genome Institute, a DOE Office of Science User Facility  located at Lawrence Berkeley …
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Accelerating Metagenomics Discoveries with Deep Learning
… On July 6, scientists from Lawrence Berkeley National Laboratory … insights from metagenomic data. In deep learning, a branch of machine learning, data is passed through algorithms … (Andrew Tritt of CRD and, independently, Ying Zhang of the University of Rhode Island), and to bin metagenomic contigs …
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An Addiction Crucial to a Fungus’ Reproduction
… A fungus relies on bacteria to regulate key components of its reproductive machinery The Science To better … a collaborative effort led by researchers at Cornell University and scientists at the Joint Genome Institute, a … This research was supported by the National Science Foundation and the …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… As SIP experiments shed more light on microbial communities than ever before — especially with the prospect of meta-analyses boosted by AI and Machine Learning — JGI … Pacific Northwest National Laboratory, Northern Arizona University, Argonne National Laboratory and the JGI.  With …
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Sequencing Sphagnum Leads to Discovery of Sex Chromosomes
… A nuanced understanding of peat moss drives insight into carbon storage   The … sphagnum  genomes from plants selected by a team from Duke University, then tested for heat and pH stress by Oak Ridge … The work (proposal no. 10.46936/10.25585/60001030) (A.J.S.) conducted by the US Department of Energy (DOE) Joint Genome …
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Defining a Pan-Genome for Antarctic Archaea
… Analysis of haloarchaeal metagenomes broadens understanding of Antarctic biogeography. The Science Haloarchaea flourish in … biogeography in the haloarchaeal gene pool, a team led by University of New South Wales (UNSW)-Sydney professor Rick … This work was supported by the Australian Research Council (DP150100244) and the Australian Antarctic …
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A Revamped Amplification Method that Enables Nearly Complete Single-Cell Genomes
… With a new methodology, scientists are now getting more complete genomic results from single cells. The Science Studying the  genomes of microorganisms is incredibly useful for understanding the … in microbiome studies, these scientists (now at Stanford University) collaborated with the JGI. Working together, …
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Expanding Virophage Diversity
… are small viruses with double-stranded DNA genomes that co-infect eukaryotic cells along with giant viruses. Virophages are … in  Microbiome , researchers from the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office … Department of Energy Joint Genome Institute, a DOE Office of Science User Facility  located at Lawrence Berkeley …
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Marine Microbe Contains Multitudes
… A deep dive into microbial genomics reveals one bacterial species is made of four ecologically distinct groups with different … — then a postdoctoral associate in Ed DeLong’s group at the University of Hawaii at Manoa — and colleagues were able to … This research was supported by grants from the Simons Foundation …
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A Community Resource for Secondary Metabolite Researchers
… The Secondary Metabolism Collaboratory encourages user engagement. The Science In addition to the core set of "primary metabolites"—chemical compounds shared by most … Genome Institute (https:// ror.org/04xm1d337), a DOE Office of Science User Facility, is supported by the Office of …
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The Surprising Structure of a Shrub Willow Sex Chromosome
… A genetic architecture that is characteristic of the sex chromosomes of mammals is, for the first time, … specimen. Stephen DiFazio, plant biologist at West Virginia University (WVU), led the study’s international team, which … M.O.). Support was also provided by the National Natural Science Foundation of China (31590821, 31561123001, 31500502, …
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