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… at a genetic level, how does  Y. lipolytica work? The project was a multi-institutional effort led by … included researchers at the U.S. Department of Energy Joint Genome Institute (JGI), a DOE Office of Science User … a team of researchers sought to disrupt every gene in the genome with CRISPR-Cas9 in order to interrogate each one’s …

… As an Integrative Genome Science User Facility, the JGI plays a leadership role in providing genome science capabilities to support BER's mission of … the boundaries of the Plant, Fungal, Algal, Microbial, Metagenome, Metabolomics, Secondary Metabolites, and DNA …

… Laboratory, wants to understand how viruses impact the release of greenhouse gases from Arctic permafrost. But to …

… attended a conference in Florida to discuss a JGI pilot project involving soil sampling in the Florida Everglades to … email request reached  Emiley Eloe-Fadrosh , the Metagenome Program Head at the  U.S. Department of Energy (DOE) … coming together of many unlikely pieces across the United States to enable the class to perform research that would …

… from another UC Berkeley colleague, longtime JGI collaborator Jill Banfield. "It was 2006, and I was sitting … is a pioneer in metagenomic studies, recovering microbial genomes from biofilm samples at the Richmond Mine in Iron … and metabolism through reconstruction of microbial genomes from the environment . Nature. 2004. 428, 37–43 …

… For the first time, a team has analyzed in parallel the genomes and transcriptomes of both partners to better … lichens. Studying the symbiosis by investigating a lichen’s genomes and transcriptomes could help inform efforts at … The scientists also sequenced the fungus and photobiont’s genomes and compared them to close relatives who don’t …

… For example, with support from the  Exascale Computing Project , the JGI — along with the National Energy Research … efforts into perspective, we caught up with JGI staff, collaborators and users to see how software and … to enable large-scale analysis. The story of a massive metagenome assembly for a time-series experiment from the …

… of California, Berkeley. He contributed to the Human Genome Project and led annotation and analysis of diverse eukaryotic genomes, from protists to plants. In 2009, he launched the … S A. 118(18):e2019855118. Miyauchi et al (2020) Large-scale genome sequencing of mycorrhizal fungi provides insights …

… crop. In 2018, the JGI had sequenced and assembled the genomes of two varieties of a close relative and model … to track crop productivity across 1,100 miles and eight states. In 2021, using switchgrass samples from these … have also harnessed the switchgrass gardens for other projects. At the 2021 JGI Annual Meeting, David Lowry talked …

… plant host health. The Science Researchers compared the genomes of fungi that colonize Arabidopsis thaliana roots with genomes from other plant-associated fungi. Their analysis … on the fungal Tree of Life through the 1000 Fungal Genomes Project. Hacquard’s group had assembled a mycobiome culture …

… address of the 2023 JGI Annual Meeting. As the JGI’s Metagenome Science Program Head, Emiley Eloe-Fadrosh, introduced … quantitative Stable Isotope Probing, or qSIP —  watch his collaborator Jane Marks explain the tool with candy here . … that the JGI has put together. In collaboration on a project with the Newman lab, an important question arose: …

… between the  U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … and Environmental Research in one proposed research project. For this project, RNA sequencing was done by the JGI, and proteomics … to MBD and MBS (#2582) and used resources at the DOE Joint Genome Institute and the Environmental Molecular Sciences …