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… Dan Rokhsar Simon Roux Asaf Salamov Jeremy Schmutz Susannah Tringe Tanja Woyke Below are a few projects each of … Chen ,  Natalia Ivanova ,  Nikos Kyrpides ,  Simon Roux , Susannah Tringe , and Tanja Woyke  were part of a “big data” … and genomic toolkit for the perennial grass  Miscanthus sinensis in  Nature Communications.  The reference genome …

… Pseudomonas putida to break down biomass and help bring about a more sustainable, biobased economy. They conduct research at the … Institute (JBEI) , a JGI partner and one of the four US Department of Energy Bioenergy Research Centers.  …

… in 2004 to lead the Genome Biology Program and the development of the comparative analysis platforms for … Inc. in Chicago, IL. He did his postdoctoral studies with Carl Woese at the University of Illinois at … at Argonne National Laboratory. Dr. Kyrpides’ research focus on Microbiome Research with an emphasis on Microbiome …

… The Science In a recent Microbiome paper , scientists focused on the conifer needle microbiome. The phyllosphere, … pine, Douglas fir and Engelmann spruce–to learn more about conifer needle microbiomes. The survey showed what … land and the atmosphere. Microbes living there can interact with chemical defenses of plants and influence nutrient …

… technology has changed dramatically over the last  25-plus years since the JGI’s inception, making it possible for … computing infrastructure and analysis. This way, JGI users — both primary, data-generating users, as well as … such tools has been a collaborative effort. For example, with support from the  Exascale Computing Project , the JGI …

… on the boundary of life science and computational science with notable stops at NERSC, IMBA (Institute of Molecular … MRI Centre in Vienna, where he first stumbled from software development into building productive infrastructure in close … the lead of the infrastructure team and the chair of the Cluster Advisory Group (CAG), he sees his role as using the …

… carbon and cycle key nutrients like nitrogen and phosphorus.  This way, the fungi of forest soils hold keys to tree … give researchers a way to access much more information about fungi in these environments. “Now with these new tools … forests. Primary metabolism, cell activity, and fungal development looked quite alike for each guild of …

… the metabolomics capabilities and product offerings for JGI users.  Using cutting-edge mass spectrometry-based … databases by running 1000s of metabolite standards, and development of high-throughput untargeted analysis … over 10k samples/year, Dr. Louie and her team work with other JGI scientists in development of new, advanced …

… detrimental microbial pathogens, and associated viruses that all contribute to a dynamic ecosystem. We are … influence, and are influenced by microbial partners. We use a variety of genomics-powered tools to study this … and complex ecosystem that includes bacteria, fungi, viruses. Resident viruses can be found in a myriad of bacterial …

… and in 2002 he became a Professor of Genetics, Genomics and Development after his research interests shifted from … and evolutionary biology. Dr. Rokhsar’s research is focused on understanding the origin, evolution, and diversity … developmental biology. In addition to this evolutionary focus, his work on plant genomics is targeted towards the …

… Berkeley is responsible for receiving and processing user samples. His R&D work focuses on the development of new applications utilizing a variety of …