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Extracting the Secrets of Secondary Metabolites
… combo helps further demystify biosynthetic gene clusters.  The Science Microbial secondary metabolites, those … a demonstration, the researchers used CRAGE-CRISPR for discovering active secondary metabolites and helping them … and other industries — yet there’s still so much about them we don’t know.  Unlocking the power of secondary …
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Computationally Classifying Fungal Lifestyles
… and feedstocks for biomass and biofuel production. Learning about the ecology and evolution of  Dothideomycetes could … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … the data provided. In this proof of concept test, the team reported that the algorithm was over 95% successful at …
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Trent Northen
… leadership roles within large DOE-funded research programs using mass spectrometry for energy and environmental … the ENIGMA SFA project. In 2015, he founded what is now the JGI Metabolomics Program to provide advanced metabolomic … Science Program Head at the JGI. Click to learn more about the program's areas of focus, major initiatives and …
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Dealing with Drought: Uncovering Sorghum’s Secrets
… to drought, from a large-scale field experiment to uncover the mechanisms behind sorghum’s capacity to produce … (UC), Berkeley, UC Agriculture and Natural Resources (ANR), US Department of Agriculture P­­lant Gene Expression Center, … and the U.S. Department of Energy Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Olpidium, The Key to the Origin of Terrestrial Fungi
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, found that the fungus Olpidium is a link in … the effort that led to the work published in Scientific Reports . Before 2006, Olpidium was one of the many obscure … of rapid development of binning methods, we were able to recover Olpidium sequences from the “contaminated” genome data …
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… carbon and cycle key nutrients like nitrogen and phosphorus.  This way, the fungi of forest soils hold keys to tree … The U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … give researchers a way to access much more information about fungi in these environments. “Now with these new tools …
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Triggering Morel Fruiting
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility,  reported on just how morel fruiting is triggered when …
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Logos and Templates
The JGI Style Guide offers tips on JGI logo usage - please follow these guidelines. Logos JGI logo – stacked JGI logo – horizontal JGI logo – indicia …
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Sequencing Technologies
… next-generation sequencing to enable biological discovery by the JGI and external DOE users. Adopting the latest  sequencing technologies has …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… a computational pipeline to sift and characterize RNA virus sequences.  A zoo once offered a coloring book featuring … NCBI and one of the senior authors on the paper, of the uncovered viral diversity. “Although the technical challenges … and Koonin both noted that other research in parallel has reported similar “dramatic expansions” of the global RNA …
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Taking Stock of the Known and Unknown Microbial Space
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … assesses what fraction of the microbial diversity we know about, and proposes a path forward to curate and cultivate … estimated diversity of the available datasets. Efforts to recover MAGs by extracting data directly from environmental …
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PhycoCosm Tutorial
Learn more about PhycoCosm, the largest interactive collection of … analysis tools developed by the Joint Genome Institute (JGI), a US Department of Energy Office of Science user facility at …
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