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Uncovering Novel Genomes from Earth’s Microbiomes
… analysis leads to identification of biosynthetic gene clusters for novel secondary metabolites for multiple … she said. Listen to study co-author Dan Udwary talk about genome mining using the GEM catalog in  this episode … draft genomes are imperfect, they can still reveal a lot about the biology and diversity of uncultured microbes.” …
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DOE JGI Interns Share Their Summer Experiences
… part of the DOE JGI’s efforts to promote diversity and inclusion in the sciences, among the interns were two … groups, respectively. Each of the interns spoke briefly about their time at the JGI at … Merced Genomics Distinguished Graduate Internship Program, Susannah Tringe and Axel Visel hosted Imelda Forteza and …
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Ancient Algae Reveal Secrets of Plant Evolution
… to terrestrial life paves the way for innovations in sustainable agriculture and clean energy. These evolutionary … in marginal lands and with minimal resources. Enabling the use of non-arable land for biomass production — that can be … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National …
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A comparative genomics screen identifies a Sinorhizobium meliloti 1021 sodM-like gene strongly expressed within host plant nodules
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Ray Turner Completes Last Tour of Lab Duty at JGI
JGI’s Operations Deputy has come to a close as this previously retired Naval Commander retires from Berkeley Lab. For … JGI’s Operations Deputy has come to a close as this previously retired Naval Commander retires from Berkeley Lab. On … is still good. “I noticed right away,” said Ellen Ford about Ray’s personal impact on her, “that you started …
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Digging into Microbial Ecosystems Deep Underground
… in terms of nutrient cycles and biogeochemical cycles…. Viruses play a pretty important role in the cycling of … these systems.” -Mike Wilkins, Colorado State University GI users and microbiome researchers Mike Wilkins and his … Amundson at Colorado State University have many questions about the microbial communities deep underground, and before …
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Notes on the Microbial Diversity of Puerto Nuevo’s Coastline
… snails, UC Merced graduate student Sabah Ul-Hasan and alumnus of the JGI-UC Merced Genomics Internship Program, first … Nuevo is, historically, a fishing town and we know little about its coastal microbial ecology. We also know little about where to collect the California Cone Snail  …
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Extracting the Secrets of Secondary Metabolites
… combo helps further demystify biosynthetic gene clusters.  The Science Microbial secondary metabolites, those … paired CRISPR and CRAGE technologies. While CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is … and other industries — yet there’s still so much about them we don’t know.  Unlocking the power of secondary …
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Annual Genomics of Energy & Environment Meeting
Thank you for joining us at the 2024 DOE Joint Genome Institute (JGI) Annual …
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Access to Rock Star Scientists
… so nice and helpful.”     Mo Kaze, UC Merced JGI Mentor : Susannah Tringe, Microbial Systems Group “Everyone here is very kind and really open to talking about their work. It’s fun to be around people who are generous with their time and like nerding out about the big stuff, well, the little stuff! People hold …
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Fungus Fuels Tree Growth
… a potential biofuel feedstock.     The Science The fungus  Mortierella elongata enjoys a dual lifestyle; it can … an endophyte, living between a plant’s root cells. The fungus is almost always found among and within poplar trees, and … were striking. Adding PM193 caused poplar cuttings to grow about 30 percent larger by dry weight than without PM193  . …
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Testing the kinetic tradeoff between bicarbonate versus phosphoenolpyruvate affinity and glucose-6 phosphate response of phosphoenolpyruvate carboxylase from two C4 grasses
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