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Boosting Small Molecule Production in Super “Soup”
… to keep processes running smoothly. As  reported August 26, 2021, in  Nature Communications , researchers led by … and so one of the things that I think is so special about this collaboration is that we’re doing work in yeast, a key platform organism that has been used historically for making …
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From Competition to Cooperation
… walls, while brown rot cannot break down the lignin but use cellulose. Finally, there are soil saprotrophs, which degrade plant detritus. Despite the different modes of nutrition, many of these … in moving toward functional genomics studies to learn more about the inner workings of plant-host and …
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Webinar: SIP technologies at EMSL and JGI
… and the JGI’s Rex Malmstrom provided background on the various isotope-related technologies available at JGI and EMSL … those found with >10% atom enrichment of 13C in your target organism in order to separate them by DNA-SIP. For various … C13 and sort of the isotope of proteomics, what about doing this with metabolites at EMSL? A:  The answer to …
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Supporting Global Research into Actinomycetes
… special groups of actinobacteria Streptomyces is more than just a funny word. The 500 species described within the group … actinomyces, especially Streptomyces and many other related organisms, requires using more specialized tools, skills and … in the JGI Natural Prodcast podcast , where she talks about this community resource. ) “Most people study …
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Leo Baumgart
… sites and which has been applied to a wide range of JGI user science projects spanning bacteria, fungi, and plants. … cells across diverse plant tissues. Dr. Baumgart focuses on expanding functional genomics capabilities through … Lax, Carlos, Stephen J. Mondo, José F. Martínez, Anna Muszewska, Leo A. Baumgart, José A. Pérez-Ruiz, Pablo …
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How Filamentous Fungi Sense Food
… Tracing gene regulatory networks in the model fungus  Neurospora crassa . The Science A team led by … degrade the plant biomass. In order to learn more about these regulatory networks in the model fungus  N. … and Development Program of Berkeley Lab, among other organizations. …
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An Earth Month Look at Sustainability Efforts at the JGI
… Sustainable Berkeley Lab maintains a  calendar of Earth Month … In the last few months, the Sustainable Garden Club has organized lunchtime gardening sessions to plant succulents … Members from across Berkeley Lab gathered to learn more about planting and tending these shoots of their own. The …
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JGI@25: From Life at the Extremes to Editing Genomes
… ecosystems around the world, conducting iterative searches using statistical analyses to continuously refine and improve the process of finding novel Cas … and Management.” So begins a passage from Doudna’s book about her meeting with Banfield. (Banfield’s recounting of …
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Eelgrass Proves to Be Much Younger Than We Thought
… Recent study shows eelgrass has been around about 2.5 million years less than previously believed.  The Science Eelgrass, one of the most … of the plant, that eelgrass began colonizing the oceans  about 3 million years ago. The study shows that figure is … and by a grant to J. Eisen, J.J.S. and J.L.O. from the US Department of Energy Joint Genome Institute Community …
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Cultivating Symbiotic Antarctic Microbes
… cultures reveal they are symbionts and not free-living organisms. The Science Researchers employed multiple … ecological consequences of microbe-microbe interactions. Using metagenomes recovered directly from environmental … researchers have been able to gain further insights about how microbes have adapted to thrive in polar …
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A Collaboration to Improve Plant Genome Annotations Across Species
… specific conditions – in over a dozen plants. To learn more about the project, HudsonAlpha’s Research Communication … It was developed to improve plant genome annotations at the US Department of Energy (DOE) Joint Genome Institute (JGI)*, … included datasets from two species, one of which is sweet sorghum Rio from a JGI Community Science Program project and …
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How to Target a Microbial Needle within a Community Haystack
… targeted genomic approach would allow researchers to focus on specific microbes within metagenome samples and … traditional shotgun metagenomics approach to learning more about environmental samples starts with researchers first … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National …
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