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… across the species. These are primarily tetraploids (4X or four copies of the genome) and octoploids (8X or eight copies of the genome). Lovell et al. focused on the 4X variety, largely because it’s been prioritized in … After our team finished analyzing the diversity present in 4X switchgrass, we were surprised by the number of 8X …

… Using this workflow, the team combed through more than 5,000 data sets of RNA sequences (metatranscriptomes) …

… updates. Phytozome  v13, which now hosts upwards of 250 plant genomes and has been under active development for over 5 years, provides users with the genome browsers, gene … deployed (as the foundation for Phytozome v10) back in 2014.  Several components of that codebase are no longer …

… For the last 15 years, Ray Turner has been one constant for the Joint … retired Naval Commander retires from Berkeley Lab. On June 24, in what was billed as a typical monthly JGI All-Hands … at 2800 Mitchell Drive, which was dedicated in February 2008. Ray won the  Director’s Award for Operations in 2017 in …

… the largest analysis to date of the modified DNA base 5mC variations in fungi. The Science Changing an A, C, T or … DNA base is a methylation of the base cytosine at the 5th position on its carbon ring, or 5mC. In many organisms, 5mC is an important piece of how …

… Methane-producing archaea are estimated to produce 500 million tons of methane a year, which is over half the …

… heads JGI’s  Microbial Program . The team mined more than 8,500 publicly available metagenome datasets generated from … a barcode to sift out virus fragments, reconstructing 2,074 genomes of large and giant viruses. More than 50,000 copies of the MCP were identified in the metagenomic …

… which is best for the task at hand. “There are at least 30-40 programs and it is not clear which are the best to use,” …

… (Berkeley Lab). They were selected through peer review from 41 full proposals out of 50 letters of intent submitted. Many of the proposals focus …

… A: Watch the video (above) for the answer provided by Sara 4.  Q(uestion): Are all CSP produced data automatically … working with us please contact me at [email protected] 5.  Q: If we have RNAseq or proteome data that is based on a … scale CSP and FICUS with March 24 and March 17 deadlines. 25-30% of proposals are selected, pretty high in comparison …

… Laboratory (BNL). The Fe deprivation RNA-seq (proposal:  10.46936/10.25585/60001386 ) was conducted by the U.S. Department of …

… the use of deletion strains generated by Grant P01 GM-068087 “Functional Analysis of a Model Filamentous Fungus” and … Laboratory under US Department of Energy Contract DE-AC02-05CH11231, a Joint Genome Institute Community Science Program … of Health National Research Service Award Trainee Grant 5T32GM007127-39. The work conducted by the US Department of …