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Finding the Fermenters
… with little or no oxygen, life had found other ways to produce energy, using a process called fermentation. To better … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … more than 400 cultured rumen prokaryotes from the  Hungate1000 project . They also used the tool to predict possible …
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Emiley Eloe-Fadrosh
… Dr. Eloe-Fadrosh joined the JGI in 2014 to pursue her research interests in microbial … uncultivated microbes and viruses. Prior to joining the JGI, she was a Bioinformatics Program Fellow at the Gordon … as part of the Marine Microbiology Initiative. She conducted her postdoctoral training in human microbiome research …
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Innovative Technology Improves Our Understanding of Bacterial Cell Signaling
… an important role in regulating microbial cellulose production and biofilm formation, which affects a number of … cyclic di-GMP in bacteria through work enabled by the JGI’s Community Science Program (CSP) . The Impact Cyclic … cellular networks with fluorescent biosensors before, but such sensors require external illumination, making them …
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Webinar: MycoCosm Tutorial
… Learn more about JGI’s  MycoCosm data portal , an interactive collection of … to search your interactive tree? A: Sure, if you enter ‘Mucorales’ in the search box, you will see only that part of … data in standard formats or contact us if you would like to share your data with other researchers 13.  Q: Is it …
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JGI Plant Gene Atlas: an updateable transcriptome resource to improve functional gene descriptions across the plant kingdom
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Enlarging Windows into Understanding Gene Functions
… JGI innovates protocol revealing how genetic variations in … features and functions. Making connections between the structures and functions of the genes encoded in the genome … Technologies Group. In an article published November 25, 2021 in Nature Methods , JGI researchers led by co-first …
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FICUS Overview
… and streamlines this process, but enables scientists to conduct fundamental science experiments in ways they couldn’t … free to the PI by the Department of Energy’s funding of the JGI. There is no cost to the user and no granting of funds. … All data is made publicly available in accordance with  JGI’s Data Policy . In cases where the JGI provides …
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First Monoploid Reference Sequence of Sugarcane
… on a genotype with two identical sets of chromosomes to produce a monoploid reference sequence. For the highly polyploid … polyploid sugarcane genome now underway as part of the JGI Community Science Program (CSP), a critical factor in … proposal by the DOE’s Joint BioEnergy Institute (JBEI), the JGI was part of an international team led by researchers …
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Mapping the Earth’s Hidden Fungal Kingdom
… with the Department of Energy (DOE) Joint Genome Institute (JGI)’s Fungal and Algal Science Program and JGI users have … of nearly 2,000 of these genomes reveals just how much we still have to discover about Earth's fungal kingdom. … for the next generation of scientists. Initiatives like our 1000 Fungal Genomes Project established crucial phylogenetic …
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Community Science Program
… sequencing, synthesis, and metabolomics at the JGI for projects of relevance to Department of Energy (DOE)  … call is for expansive projects that leverage a range of JGI capabilities, and also requires a Letter of Intent. The New Investigator call is for PIs who have never led a JGI project, and the Functional Genomics call is for …
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Applying Viral Genomics Expertise to Understanding the Human Virome
… JGI researchers lend expertise to develop tools and data hub … in developing and managing public viral genomics resources such as analytical tools and data repositories to two … metagenome-assembled viral genomes ( Nature Biotechnology , 2021), geNomad , a tool for identifying mobile genetic …
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Dan Rokhsar
… Dr. Rokhsar joined the JGI in 2000 as the founding Associate Director for … annotation, and analysis of three human chromosomes. After successful completion of the Human Genome Project, Professor … over fifty plant and animal genomes. He currently leads the JGI’s Computational Genomics group, and is past lead of the …
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