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A Plant Root Atlas for Tracking Developmental Trajectories
A collaborative team led by Geoffrey Schiebinger at the University of … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … the paper also aligns with his DOE  Early Career Research Program (ECRP) award, which is also focused on single-cell …
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Ancient Algae Reveal Secrets of Plant Evolution
Research uncovers the genetic foundations that helped plants conquer land over 600 million … a strong bioeconomy. Summary Through the Community Science Program of the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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User Executive Committee
The UEC represents the JGI user community and is responsible for providing input and advice on JGI policies and practices that affect users and their science including technical …
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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
… ancestral and present-day plants The Science In a recent  Nature Genetics paper , researchers focused on the full … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … Berkeley National Laboratory through the Community Science Program . The comparative framework provided by these high …
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Metabolomics
Metabolomics strengthens -omics technologies at the JGI by identifying the actual molecules present in an … leads to the discovery of new molecules and pathways. The JGI Metabolomics Platform delivers rich metabolite profiles …
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How Maize Makes An Antibiotic Cocktail
Maize produces a family of compounds that protects it against infections — using surprisingly few … as  Sorghum bicolor — a  candidate bioenergy feedstock and  JGI Flagship Plant — could produce at least 15 zealexins. … of Science User Facility, through its  Community Science Program . And the work is part of a  larger CSP Functional …
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Understanding Wildfire Recovery, Starting in Soil
… after a wildfire — and why they thrive — gives forest managers more avenues to bring forests back to full … and growth.  This study builds on the pyrophilous fungi the JGI has previously sequenced , and provides a powerful … for User Science (FICUS) initiative . In this program, researchers leverage the capabilities of more than …
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Rex Malmstrom
… is a Staff Scientist and leader of the Microscale Applications group. Before joining the JGI in 2010, he made the first ever measurements of in situ … populations. ISME Journal 10 (7), 1589 Kashtan, N et al. 2014. Single-cell genomics reveals hundreds of coexisting …
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I-Min (Amy) Chen
… research has been focused on semantic and object-oriented data modeling, and biological data management. She was one of … currently the Microbiome Computational Resource Lead at the JGI, responsible for the data management infrastructure of … Data Analysis System in an Academic Setting, SSDBM 14, July 2014 … Selected Publications …
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Making a Lichen Together
To shed light on lichen, an international team led by Daniele Armaleo, a biologist at Duke University, … colleagues worked with Igor Grigoriev, the Fungal & Algal Program lead at the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility. Grigoriev and …
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Genome assembly and annotation of microalga Nannochloropsis oceanica C018.
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How Filamentous Fungi Sense Food
Tracing gene regulatory networks in the model fungus  Neurospora crassa . The … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … work was enabled in part through JGI’s Community Science Program through a proposal akin to the Encyclopedia of DNA …
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