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JGI@25: Strengthening Soybean
… impressive environmental and energy advantages explain why soybean is a flagship genome of the JGI’s Plant Program. … first legume species with a published complete draft genome sequence. At the time, the vital global source of both … of seed oils as biofuel. After analyzing the original sequence, Gary Stacey of the University of Missouri said he …
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DNA Synthesis Program
… Program aims to generate large datasets to explore sequence-function relationships, advancing the discovery of … Science Group supports researchers exploring how to convert sequence into functional assessments. The team has a … of fungi. Mycocosm enables users to navigate across sequenced fungal genomes, and to conduct comparative and …
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2021 JGI Proposal Call Brings New Investigators into Community Science Program
… to as natural products, the proposal includes plans to sequence several thousand Actinobacteria strains and then use computational tools to analyze … through photosynthesis, but only a fraction have been sequenced.  Adriana Lopes dos Santos from Singapore’s …
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JGI@25: A Single Cell, Myriad Microbial Discoveries
… first closed and finished genome derived from an uncultured bacterial single cell – a symbiont of the green … populations in oxygen minimum zones identified SAR11 bacteria as initiators of nitrogen loss in these waters. The … cell (seen here in a glass capillary), researchers sequenced and assembled the first complete genome of an …
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Genome Calligrapher: A Web Tool for Refactoring Bacterial Genome Sequences for de Novo DNA Synthesis
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Fourteen genome sequences from bacterial, environmental isolates from the Cotton Glacier stream, Antarctica
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Seven genome sequences of bacterial environmental isolates from the western coast of the Greenland Ice Sheet
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Accelerating Metagenomics Discoveries with Deep Learning
… of proteins in order to conduct more efficient protein sequence alignments. He also aims to detect structural similarities in proteins that low sequence identity may belie. The technology he’s using is … Deep learning algorithms can vectorize faces… … so, why not proteins?         …
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An Enzyme Family that Helped Shape Nitrogen Metabolism on Our Planet
… our focus on all the kingdoms, including animals, plants, bacteria, archaea and fungi. We thought this kind of … to the way many organisms function, they have a sense of why nitrogen metabolisms can be so varied.  As evolution has … different Swiss Army knives — explaining a bit more about why and how nitrogen metabolism is so robust and varied.  …
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Improving the Cacao Genome and Phytozome
… to climate change and devastating fungal infections. That’s why Mars, Inc., a maker of chocolate for more than 100 years … through the Cacao Genome Database project. The genome sequence was assembled by the plant team at the  HudsonAlpha …
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Tanja Woyke Awarded van Niel International Prize for Studies in Bacterial Systematics
… awarded the van Niel International Prize for Studies in Bacterial Systematics for the triennium 2017-2020! …
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Micro-Scale Applications Group
… access to cutting-edge cell sorting, DNA amplification, and sequence analysis to recover the genomes of uncultivated … now uses laser microdissection to selectively isolate and sequence microbial aggregates after first imaging with …
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