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Engagement Webinar: What Can You Do With An Approved CSP Functional Genomics Call Proposal?
… a  JGI Engagement: Accessing Functional Genomics Capabilities Webinar inviting researchers to submit white papers to … JGI was one of the first things we actually started doing when starting the lab. It has been, especially from an early … What is the review process for submitted proposals?   A:  When a proposal is submitted to the JGI, JGI scientists will …
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Better Genome Editing for Bioenergy
Science CRISPR-Cas9 is a powerful, high-throughput gene-editing tool that can help scientists engineer organisms for bioenergy applications. Cas9 needs guide RNA to lead it to the correct sequence to snip — but not all guides are … HA and JW were supported by the Office of Naval Research under grant  N00014-15-1-2785 . JW acknowledges additional …
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Forming Scientific Connections and Building Community
… year the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, hosted three undergraduates and seven graduate students from UC Merced … networking workshops, data carpentry hackathons, and also made new friends while working on their summer projects. …
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Toward More Efficient Artificial Photosynthesis
… they take raw materials including sunlight, carbon and water, to convert them into energy that is then stored. A team led by researchers at the Max Planck Institute (MPI) for Terrestrial Microbiology and the University of Bordeaux have developed a platform that mimics …
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New Research Sheds Light on Diversity in the Deep Sea
Microbial communities living near hydrothermal deep-sea vents hold vast … openings in the Earth’s crust that emit hot, mineral-rich water. These vents are too deep in the sea to get any … to living in extreme conditions. At these vents, and underwater volcanoes,  researchers studied microbial …
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Genome analyses of the carboxydotrophic sulfate-reducers Desulfotomaculum nigrificans and Desulfotomaculum carboxydivorans and reclassification of Desulfotomaculum caboxydivorans as a later synonym of Desulfotomaculum nigrificans
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Graduate Students Get Thesis Research Opportunity at the JGI
… (SCGSR) program awards graduate students the opportunity to pursue part of their thesis research at one of the … opportunity to launch a pilot project and begin the work of understanding how engineered environments contribute to … will expand with her study of microbes in California’s manmade water transport canals. “This award allows me to work …
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Notes on the Microbial Diversity of Puerto Nuevo’s Coastline
… the area in summer 2016.  She described the microbial diversity patterns of Puerto Nuevo’s coastal waters and sediment … know anything about Principal Component Analysis (PCAs) when I first started, and overall found informatics to be … much to learn, I certainly feel much more advanced in my understandings than I would be at this stage without the …
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Massive lateral transfer of genes encoding plant cell wall-degrading enzymes to the mycoparasitic fungus Trichoderma from its plant-associated hosts
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From Berkeley to Binghamton: Tracking Strawberry Evolution
Session was a postdoc working at the DOE Joint Genome Institute with Dan Rokhsar, who also holds a joint appointment … a single species. By contrast, “allopolyploids” arise when different ancestral species crossbreed before genome … is likely the most important, but also the ability to understand the complicated evolutionary history of …
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2024 Progress Report
… (IGB) seen above is home to the DOE Joint Genome Institute (JGI). Researchers from the DOE Systems Biology … with us, along with more than 15,000 secondary users who made use of our data. We completed 39,870 projects in FY24 … genomic innovation to provide the foundational biological understanding that opens up new ways to harness biology. …
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A One-Stop Shop for Analyzing Algal Genomes
… organisms. PhycoCosm is one of the largest data repositories of its kind, with an interactive browser that allows … natural products, and have potential as biofuel feedstocks. Understanding the genetic underpinnings responsible for … that answers what genes are present in which organisms, when are they expressed, and what they do. Summary The name …
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