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Sequence-based bioprospecting of myo-inositol oxygenase (Miox) reveals new homologues that increase glucaric acid production in Saccharomyces cerevisiae
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JGI@25: Roots of a Mutualist Relationship
… In honor of the JGI's 25th anniversary in 2022, we have … number of notable achievements that showcase our collaborations and capabilities to enable great science that will help … many sequenced through the JGI 1000 Fungal Genomes Project.       Francis Martin on the main impact of …
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You Can Move, But You Can’t Hide
… and spread from cell to cell. Two of the most common forms of MGEs are viruses and plasmids. They can be found … called geNomad identifies and classifies MGEs based upon their gene content and their genetic sequences. The software was created … used computational resources from the Exascale Computing Project (17-SC-20-SC), a collaborative effort of the U.S. …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… Team develops a computational pipeline to sift and characterize RNA virus sequences.  … viruses,” said Simon Roux , a JGI scientist and one of the project co-leads. “But same as DNA viruses, RNA viruses … 2019, recalled Uri Neri of Tel Aviv University, one of the project co-leads and first author of the study. Members of …
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High Five: Celebrating the JGI-UC Merced Genomics Internship Program
… More than 20 UC Merced students have contributed to the research of 13 JGI scientists since the … shared their thoughts on the students’ efforts. Ben Cole, a project scientist in Visel’s Genomics of Plant-Microbial … Responses Under Climatic and Environmental Change (SPRUCE) project Melanie LeGro (2016 graduate intern): Currently …
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Viruses Reprogram Cells into Different Virocells
… But if the duck gets infected by a virus so that it no longer looks or quacks like one, is it still a duck? For a … and Environmental Research in one proposed research project. For this project, RNA sequencing was done by the JGI, and proteomics … A portion of this research was performed under the Facilities …
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Improving the Cacao Genome and Phytozome
… brands can’t exist without cocoa According to the  International Cocoa Organization (ICCO), global cocoa bean production in 2017-2018  was … Mars, Inc.-led consortium through the Cacao Genome Database project. The genome sequence was assembled by the plant team …
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The Exometabolome of Xylella fastidiosa in Contact with Paraburkholderia phytofirmans Supernatant Reveals Changes in Nicotinamide, Amino Acids, Biotin, and Plant Hormones
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Access to Rock Star Scientists
… Cole, Mo Kaze, Akshay Paropkari, Vicente Ramirez and Rhondene Wint had summer 2018 internships in Walnut Creek. The … by passionate scientists working on interdisciplinary projects. I feel inspired to pursue a career in STEM. … to know you and provide all resources to excel in your project.”     Vicente Ramirez, UC Merced JGI Mentor: Albert …
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JGI Earth Month: Wetlands Work in #TenHundredWords
… April marks both the 50th celebration of Earth Day on April 22, and DNA Day on April 25. As both Earth and DNA … Graduate Student Research (SCGSR) program . Her research project, “Microbial Community Structure and Methane … of Science User Facility  located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in …
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High-Quality Draft Genome Sequence of Kallotenue papyrolyticum JKG1T Reveals Broad Heterotrophic Capacity Focused on Carbohydrate and Amino Acid Metabolism
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Rumen metagenome and metatranscriptome analyses of low methane yield sheep reveals a Sharpea-enriched microbiome characterised by lactic acid formation and utilisation
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